AMCG00007949 (pigu)


Basic Information

Item Value
gene id AMCG00007949
gene name pigu
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38002950 ~ 38010795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007949
ATGAGGACTAGCACTGCCTACAGCCACAGCGCCGGCAAAAGGAGGACGTCTTGGATTCCTCTGGCACTGCCCGGATCGAGCTTGGCCGAGCTGATAGCGCAGCGGGTGGAGGTGGTGTCCCCGTTAAACGCGTGGAAACGAGTGGTGGAGGGCCTGGCGCTGCTGGACCTGGGCGTGACGCCGTACTCCGGGGATGTTTTCCACGAAATAGCGGATGGCATTACGGCCGTGGCGTTGTACTTGGCGGTGCAGGACTACAACAAGATTGTGTTCCGAAAACAGAAGTATGCCCTGGAAGCAGACCGGTACCCCCGGGACGTCCTGGAGCTCATCCAAACCCCTAAGGACATGTACTACATCCCCCTTAAAGTGGCTTTGTTTTATTTGCTGAATCCTTTCACGATCCTGTCTTGTGTGGCCCAGTCGACCTGTGGGCTCAACAATGCAGTCATCGCCCTGTTCATCCTATGTACAATCAAAGGAAGTGCCTTCCTCAGTGCGGTTTTCCTGGCCCTGGCTACGTACCAGTCCATCTACCCCATCACGCTGTTCGCACCCGCGCTGCTGTTCCTGCTGCAGcgGCTCTATATCCCGGTGAGTTTGCACTGCCCCCGCTTCTGGGTGCAGGCGCTGCAGTACGGGGTAATGTTCCTGGGCAGCCTGGTGGTCATCGTCTGCCTCTCCTTCTTCCTACTCAGCTCCTGGGACTTCATCCCTTCCGTGTATGGCTTCATCCTATCCGTGCCCGACTTGACACCCAACATCGGCCTGTTCTGGTACTTCTTTGCGGAGATGTTCGAACATTTCCGCCTCTTCTTCCTCTGCGTCTTCCAGATCAACGTCTTCTTCTACAtcatccctctctccatcaAGCTAAAGGAGCACCCCGTCTTCCTGATGTTCATGCAGATCGCCATCATCTCCATCTTCAAGTCCTACCCCACGGTGGGGGACATCGCCCTGTACATGGCCTTCCTGCCCGTCTGGAGCCACCTGTACAGATTCCTGAGGAATATCTTCCTGGTGTCCTGTGTGCTGCTGGCCTGCTCTGCGCTGTTCCCTGTCCTCTGGCACCTGTGGATCTTCGCCGGCAGCGCCAACTCCAATTTCTACTACGCCATCACCCTGGTGGAGCACCACATGGCCCACGGGCTCTACCTGAAGAGGAAGGACGGCTCCGAGGCCACGCTGGTGCTCAAATAA

Function

symbol description
pigu Enables GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGU (phosphatidylinositol glycan anchor biosynthesis class U).

NR:

description
Phosphatidylinositol glycan anchor biosynthesis class U protein, partial

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05293 PIGU; GPI-anchor transamidase subunit U

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007949 True 1203 mRNA 0.57 12 38002950 38010795

Neighbor

gene id symbol gene type direction distance location
AMCG00007942 NA coding upstream 412376 37579068 ~ 37590574 (+)
AMCG00007937 chd6 coding upstream 428564 37553993 ~ 37574386 (+)
AMCG00007940 NA coding upstream 501219 37496217 ~ 37501731 (+)
AMCG00007938 blcap,bc10 coding upstream 506748 37495198 ~ 37496202 (+)
AMCG00007934 LOC104960738 coding upstream 521779 37469923 ~ 37481171 (+)
AMCG00007950 NA coding downstream 381 38011176 ~ 38014794 (+)
AMCG00007947 NA coding downstream 8097 38018892 ~ 38026850 (+)
AMCG00007951 LOC107385061,LOC106582629 coding downstream 56593 38067388 ~ 38070843 (+)
AMCG00007948 NA coding downstream 69961 38080756 ~ 38086751 (+)
AMCG00007956 NA coding downstream 462921 38473716 ~ 38476488 (+)
G27462 NA non-coding upstream 225488 37777065 ~ 37777462 (+)
G27400 blcap,bc10 non-coding upstream 503565 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 909620 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 1046496 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 1157426 36843981 ~ 36845524 (+)
G27489 NA non-coding downstream 6073 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 16585 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 428779 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 430741 38441536 ~ 38442071 (+)
G27561 NA non-coding downstream 470502 38481297 ~ 38482391 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 786392 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1700109 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 2382149 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 4208009 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6562572 31414154 ~ 31440378 (+)
G27518 NA other downstream 134189 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 157775 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 345134 38355929 ~ 38423155 (+)
G27551 NA other downstream 421250 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 681944 38692739 ~ 38708915 (+)

Expression


Co-expression Network