AMCG00007951 (LOC107385061,LOC106582629)


Basic Information

Item Value
gene id AMCG00007951
gene name LOC107385061,LOC106582629
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38067388 ~ 38070843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007951
ATGCAGTTCGTCCCCCGTCCCTCGGACTACAGTGGGATGACTGAGGCTTTGCATGCTAACCCATCTTGGAGCTGCCCTGGCTCCTACCAGGGTGGTGCGGTTGGGCATCATTCTACCCCACCAGAGGTGTGTGGAGCCACAAAGGAAATTGGGTCGGCTCTGACTCGGATGTGCATGAGACACCGGAGCATCGAGTCCAAACTCAAACTCTTCACAACGGCTCTGACGGAGAGTCTGATCAGCCCCCTGGAGCTGAAGATCGAGGAGTGGAAGAAGGTGGCCAGCCAGTTGGACAAGGACCATGCCAAAGAGTATAAAAAGGCCCGTGCGGACATCAAGAAAAAATCTTCGGACACCATCAAGCTGCAGAAGAAAGTAAAGAAAGGTAAGACGCGCTGA

Function

NR:

description
PREDICTED: metastasis suppressor protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007951 True 399 mRNA 0.54 5 38067388 38070843

Neighbor

gene id symbol gene type direction distance location
AMCG00007947 NA coding upstream 40538 38018892 ~ 38026850 (+)
AMCG00007950 NA coding upstream 52594 38011176 ~ 38014794 (+)
AMCG00007949 pigu coding upstream 56593 38002950 ~ 38010795 (+)
AMCG00007942 NA coding upstream 476814 37579068 ~ 37590574 (+)
AMCG00007937 chd6 coding upstream 493002 37553993 ~ 37574386 (+)
AMCG00007948 NA coding downstream 9913 38080756 ~ 38086751 (+)
AMCG00007956 NA coding downstream 402873 38473716 ~ 38476488 (+)
AMCG00007959 pmepa1,LOC106582623 coding downstream 493632 38564475 ~ 38570223 (+)
AMCG00007965 NA coding downstream 505279 38576122 ~ 38605013 (+)
AMCG00007963 NA coding downstream 550279 38621122 ~ 38627736 (+)
G27497 NA non-coding upstream 39465 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 50244 38016868 ~ 38017144 (+)
G27462 NA non-coding upstream 289926 37777065 ~ 37777462 (+)
G27400 blcap,bc10 non-coding upstream 568003 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 974058 37092649 ~ 37093330 (+)
G27552 NA non-coding downstream 368731 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 370693 38441536 ~ 38442071 (+)
G27561 NA non-coding downstream 410454 38481297 ~ 38482391 (+)
G27581 NA non-coding downstream 601028 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 721606 38792449 ~ 38834594 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 850830 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1764547 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 2446587 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 4272447 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6627010 31414154 ~ 31440378 (+)
G27518 NA other downstream 74141 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 97727 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 285086 38355929 ~ 38423155 (+)
G27551 NA other downstream 361202 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 621896 38692739 ~ 38708915 (+)

Expression


Co-expression Network