AMCG00007952 (romo1,LOC102788570)


Basic Information

Item Value
gene id AMCG00007952
gene name romo1,LOC102788570
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38168570 ~ 38170146 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007952
AGCATGGCGTCCTGGTAGAGCGGATGAAGCTGTTGTCTATCGGAGCGTGAGTGTCAGCAAGAGACGCGAAGAAAAGCACGTCGGAGAAACCGCTGCTAACGGCGACAGGGCGGAACACAGCGCACATACACACGGTAAGGTGGGATGTATGAAGAGCGGGGGTCTGCTGCGCCGCGGCGCTGTTTTCAAGGCCGAGCCGAGGTGACATTGCACGGATCCGGATGGAAGAGCGGCTGCAGCGCGGCGTGCCCAAGACTGGAGGACGCGCTCATAACGAGCACACTAGTTTGCGCTTGTTTTGAGCAAAAGGGCTGGATAATGCGTGCAGGATTAGTGTGCAGCAGCCGGGACTCTGGCCAGAGTGATCGAGCAGCTGATGCCTTCACCGGGACTGGCCACACTGGGAATACTTTCACAGTTTACAAAATGCCAGTGGCAGTCGGACCGTACGGGCAGTCCCAGCCCAACTGCTTTGACAGGGTCAAGATGGGCTTCATGATGGGCTTTGCGGTGGGCATGGCGGCAGGGGCCATGTTCGGCACCTTCTCCTGTCTCAGGATCGGGATGAGAGGCAGGGAGCTGATGGGAGGTGTGGGGAAGACCATGATGCAGAGTGGGGGCACGTTTGGGACGTTCATGGCCATCGGAATGGGCATCCGCTGCTGAGACCCTACCCCACATCTGCGCACTTTAAACGCGATTCTTAGGCCTAGCAAATCCATTCCCCTGTTGTGTACTCACTGTAAATAATTGTGAAACAAAGGAacgaataaaaacaaacacggATGATAATCACAACTGTGTACAGTGATTGGTGGAGAAGGACAGGGAGGTGGGATCCTGGTTGAGGGCACTGCTGTAAAAAGATCCTGAAAAGATGCTCTGAGGCTGGAGGGCCAGATATCTAATTgttcagttaaataattaagaacTGG
>TU34423
CGCGGAGCTTGCTTCTGGCCTTTAACACTCGGCTTCACTTCCTGTCCAGAAAGCATGGCGTCCTGGTAGAGCGGATGAAGCTGTTGTCTATCGGAGCGTGAGTGTCAGCAAGAGACGCGAAGAAAAGCACGTCGGAGAAACCGCTGCTAACGGCGACAGGGCGGAACACAGCGCACATACACACGATGCCAGTGGCAGTCGGACCGTACGGGCAGTCCCAGCCCAACTGCTTTGACAGGGTCAAGATGGGCTTCATGATGGGCTTTGCGGTGGGCATGGCGGCAGGGGCCATGTTCGGCACCTTCTCCTGTCTCAGGATCGGGATGAGAGGCAGGGAGCTGATGGGAGGTGTGGGGAAGACCATGATGCAGAGTGGGGGCACGTTTGGGACGTTCATGGCCATCGGAATGGGCATCCGCTGCTGAGACCCTACCCCACATCTGCGCACTTTAAACGCGATTCTTAGGCCTAGCAAATCCATTCCCCTGTTGTGTACTCACTGTAAATAATTGTGAAACAAAGGAacgaataaaaacaaacacggATGATAATCACAACTGTGTACAGTGATTGGTGGAGAAGGACAGGGAGGTGGGATCCTGGTTGAGG

Function

symbol description
romo1 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

NR:

description
PREDICTED: reactive oxygen species modulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007952 True 935 mRNA 0.55 3 38168621 38170146
TU34423 False 609 TUCP 0.55 3 38168570 38170061

Neighbor

gene id symbol gene type direction distance location
AMCG00007948 NA coding upstream 81819 38080756 ~ 38086751 (+)
AMCG00007951 LOC107385061,LOC106582629 coding upstream 97727 38067388 ~ 38070843 (+)
AMCG00007947 NA coding upstream 141720 38018892 ~ 38026850 (+)
AMCG00007950 NA coding upstream 153776 38011176 ~ 38014794 (+)
AMCG00007949 pigu coding upstream 157775 38002950 ~ 38010795 (+)
AMCG00007956 NA coding downstream 303570 38473716 ~ 38476488 (+)
AMCG00007959 pmepa1,LOC106582623 coding downstream 394329 38564475 ~ 38570223 (+)
AMCG00007965 NA coding downstream 405976 38576122 ~ 38605013 (+)
AMCG00007963 NA coding downstream 450976 38621122 ~ 38627736 (+)
AMCG00007964 NA coding downstream 466336 38636482 ~ 38661331 (+)
G27497 NA non-coding upstream 140647 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 151426 38016868 ~ 38017144 (+)
G27462 NA non-coding upstream 391108 37777065 ~ 37777462 (+)
G27400 blcap,bc10 non-coding upstream 669185 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 1075240 37092649 ~ 37093330 (+)
G27552 NA non-coding downstream 269428 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 271390 38441536 ~ 38442071 (+)
G27561 NA non-coding downstream 311151 38481297 ~ 38482391 (+)
G27581 NA non-coding downstream 501725 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 622303 38792449 ~ 38834594 (+)
G27518 NA other upstream 21720 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 952012 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1865729 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 2547769 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 4373629 33763513 ~ 33794941 (+)
AMCG00007957 raly other downstream 185783 38355929 ~ 38423155 (+)
G27551 NA other downstream 261899 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 522593 38692739 ~ 38708915 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 1332933 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 1340265 39510411 ~ 39592411 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033173 romo1 coding NC_007117.7 CM002890.2 50401620 ~ 50404732 (-)