AMCG00007957 (raly)


Basic Information

Item Value
gene id AMCG00007957
gene name raly
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38355929 ~ 38423155 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007957
cAGTTGAAAAACGAGAAAGGggaggaggacgaggacaaGACACAgtaataagagagagagagcgagagagagagagagagagagaagaagaacaTTTAAAAGGTGTGAGAGAaccaaaaacaaaggaaaagcgAAAGCGAAACCGCGAAGATGTCCCTCAAGGTCCAGACCAGTAACATCACCAACAAGAACGACCCGAAGTCCATCAACTCGCGGGTGTTCATCGGGAACCTCAACACGGCCGTGGTGAAGAAGACCGACGTGGAGACCATCTTTTCCAAGTACGGCCGGGTGCTGGGCTGCTCCGTGCACAAGGGCTACGCCTTCGTCCAGTACGCCAGCGAGCGGCACGCCCGGGGGGCCGTGCTGGGGGAGAACGGGCGGGTGCTGGCCGGGCAGACACTGGatatcAACATGGCCGGGGAGCCCAAACCCAACCGGCCCAAAGGACTGAAGCGATCAGCTGCAGCTCTGTACAGTGGTTATGACTTTGACTACGATTACTACAGAGACGACTTCTATGACAGactCTTTGAGTACAGAGGGCGTGTGTCCCCGGTCCCTCGTGTGGTGCCGGTGAAGCGCCCCCGTGTGGCTGTGCCGCTGGTGCGCAGGGTGAAGTCGCTGCCGGTCAAGCTGCTGGCACGATCCGCCTCCATCGCCAACAGCTCCGCCAAGCAGAAATACGGCAGGGTGCTTGAAGAGACTGACGACTGGAAATGAACTGTTTTAGCCCCACGGGCGCAGCGCTGAGACGCACCTCCACGGGCACGTCAGTCTCAACACCAGCCTCCGCCAGAGACCGAGCAGCCAGCCTGCTGAAGTAGAAAGCTTCCCTGGAAACAGACAAGTCAACTGTTCTACTGCCTGAATCTACCACACAACAAAACTTGGCTTTCCTGggcttcaaaagaaaaactaaacaaaacaaaacaaaggttcAATAACTTGTGGGGTTCAAAACAAACTTTTCCAACCATGTGGAATATTAGCATTCTCATAAACGAGGACATTTTATGAGTGCTACCGACCCCGAGAACATGACCACCACGcctccaccacccccccaccaccatccCTTGTGTTTTCGTAATcttcctgttgttttatttatatatgggATCTAAAAtagatgtaaaaaaagaaaaaaaatgaaaatggttatttttaattactt
>TU34447
GTTCTGCGGAGAGCGCCCTGCCAGTGCGTGTGTGCGGCGCTgcggctgtgtctgtgtgcctctGCATCTGTCTTATTGCTCTCCgcatttttattgcttctgaAATTTTGCTTGTTGAAAAACGAGAAAGGggaggaggacgaggacaaGACACAgtaataagagagagagagcgagagagagagagagagagagaagaagaacaTTTAAAAGGTGTGAGAGAaccaaaaacaaaggaaaagcgAAAGCGAAACCGCGAAGATGTCCCTCAAGGTCCAGACCAGTAACATCACCAACAAGAACGACCCGAAGTCCATCAACTCGCGGGTGTTCATCGGGAACCTCAACACGGCCGTGGTGAAGAAGACCGACGTGGAGACCATCTTTTCCAAGTACGGCCGGGTGCTGGGCTGCTCCGTGCACAAGGGCTACGCCTTCGTCCAGTACGCCAGCGAGCGGCACGCCCGGGGGGCCGTGCTGGGGGAGAACGGGCGGGTGCTGGCCGGGCAGACACTGGGTACGCCGTCTCCC

Function

symbol description
raly Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

NR:

description
RNA-binding protein Raly isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12895 RALY, HNRNPCL2; RNA-binding protein Raly

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007957 True 1177 mRNA 0.52 5 38412510 38423155
TU34447 False 531 TUCP 0.56 2 38355929 38412929

Neighbor

gene id symbol gene type direction distance location
AMCG00007948 NA coding upstream 269178 38080756 ~ 38086751 (+)
AMCG00007951 LOC107385061,LOC106582629 coding upstream 285086 38067388 ~ 38070843 (+)
AMCG00007947 NA coding upstream 329079 38018892 ~ 38026850 (+)
AMCG00007950 NA coding upstream 341135 38011176 ~ 38014794 (+)
AMCG00007949 pigu coding upstream 345134 38002950 ~ 38010795 (+)
AMCG00007956 NA coding downstream 50561 38473716 ~ 38476488 (+)
AMCG00007959 pmepa1,LOC106582623 coding downstream 141320 38564475 ~ 38570223 (+)
AMCG00007965 NA coding downstream 152967 38576122 ~ 38605013 (+)
AMCG00007963 NA coding downstream 197967 38621122 ~ 38627736 (+)
AMCG00007964 NA coding downstream 213327 38636482 ~ 38661331 (+)
G27497 NA non-coding upstream 328006 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 338785 38016868 ~ 38017144 (+)
G27462 NA non-coding upstream 578467 37777065 ~ 37777462 (+)
G27400 blcap,bc10 non-coding upstream 856544 37495159 ~ 37499385 (+)
G27334 NA non-coding upstream 1262599 37092649 ~ 37093330 (+)
G27552 NA non-coding downstream 16419 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 18381 38441536 ~ 38442071 (+)
G27561 NA non-coding downstream 58142 38481297 ~ 38482391 (+)
G27581 NA non-coding downstream 248716 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 369294 38792449 ~ 38834594 (+)
AMCG00007952 romo1,LOC102788570 other upstream 185783 38168570 ~ 38170146 (+)
G27518 NA other upstream 209079 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1139371 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 2053088 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 2735128 35610982 ~ 35620801 (+)
G27551 NA other downstream 8890 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 269584 38692739 ~ 38708915 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 1079924 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 1087256 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 1117065 39540220 ~ 39545607 (+)

Expression


Co-expression Network