AMCG00007959 (pmepa1,LOC106582623)


Basic Information

Item Value
gene id AMCG00007959
gene name pmepa1,LOC106582623
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38564475 ~ 38570223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007959
ATGTCTAGAGTGCTGATCCTCTCGGGTGGGGGCGGGGGCACAGCCCAGCTGGAGTTTGTGCAGATCCTGGTGATCGTGGTGGTGCTcatggtgatggtggtggtgatcACCTGTCTGCTCAACCACTACAAGCTGTCGGCCCGCTCCCTCATCAGCCGGCACAGCCAGGCCCGGCGCCGCCACCTGCCCCTTGCCTCCgATGGGAGCCTGTGGCAGTCTGACGGCTCAGGTCCCTCCAGTGGAATGACAGAGcAGCATATGTACACCCCGCGGCCCCCGGACCGGTTGCCCATCCCGTCGTACCTGCAGAGGGATCGCTTCGCACGCTTCCAGCCCACCTACCCCTACCTGCCCCACAACATCGACCTGCCCCCCACCATCTCCCTGTCGGACGGGGAGGAGCCCCCCCCCTACCAGGGGCCGTGTACCCTGCAGCTGCGAGACCCCGAGCAGCAGCTGGAGCTTAACCGTGAGTCGGTGCGCGCCCCCCCCAACCGCACCGTGTTCGACAGTGACCTCCTCGACACCTCCATGTGCCCCCCCAGCCTACACTCCGGGGTCAGCGCCTCCTGCTACGGCAGCCAGGGCCGCCTGGAGGGGCCACCCCCCACGTACAGCGAGGTCATAGGACACTGCCCGCCCCTGCCCCCCAGCCCGGCCTACTACCCCCCGGGTAGCGCCACCACTGCCCCCcagagacagcagcagcagcagcccctgCAGACTGCCACCTCGGCCCCCCAGCCTCACCCCCACAGCCACAATCACAACCACAGACTCAACCAATCACAGCTCAGCAGTCTGGAGAGCACAAATGCACGCAACAAGGAGAAGCAGAAGGTGCAGCCATTCTGATGGGATGGGCCAGGccaggggcggggggggcgtTCTTTAGGGTGGTTTTGACACTTTGTGCACTTCATTCAAAACCAACTgtgccccccagccccccacacCCGAGGAGAGGGCGCCGTCCCACAATCAGGGACACCCAGTTCCTGCCCCTCTCCTCCCTCGGTCGTATATATTTACTCGTggcgcgtgtgtgcgtgtgcgtgtgtgtgtgcgtgcgtctcCGTGCTCACAGCTTCTGCTtttctatatattgtttttatatatactgaGGAATTTAAAAAACGAAAGCTGAAAAAAATCGAATccatttttttgcttttacttatttatttttcattcgttttgtttctgttgtcgTTCGGTTATTATCgctgttgttcttgttattgttattatcattacttattttttcaggGTTAATCGTCTGATCCCTTGTAGTGTTTCACAGGAATGCGTTCAGCTTGGGTGTCTCGGGCTGCACTGTGAGCTCCACCACGTCAACTTACCTCTGTAACGCCCGCTCTTAATTCGAACTGCTCAAAAGTCTTTAGAAGTCTTCCTTTTACATTTGGACGACTATTTTCTGCTCGGCGTGCTGACCGCACCCACAAGACGGCGTGGCCTCTCGTCTGCAGACCGGTGCGGTGTCTTTCCCCTGCGGAGCGGCAGTGGTCGGGCTCGGCACTGTCCCTGGGACTCATCTGTGGAGCAGAGCGCATGAATGCTTTACTCTGTCTTTAATTTCCTTCACTTTTTAAGAAACGTttgcacaaaaagaaaaaacaaataatctgaAAGATCTGCAATATGTATAGTAAGAGATGAGTGTCAGTGCGAGAGCTGGGGTATTTTTGTAAAAGCAAAACGGATTATAAAgagaaatagttttgttttttgttttctgtatgtttttgttcagtCTGAAAAACTAGAGAAGTGAACTGGCAGATTCACTCGGGGTGCCAACTCAAAGCGTGTTTAACCTTGTGGGGACgaaaagaaaagctgaaaaACTAACTTAAAATCAAGCACGATTTTAgagttatttatataaatgttgaaaataaatattgcactattttttaatataaaaaaaacaaaaaaaaaaaaaacctctattGATCTGAGACCTgttttgt

Function

symbol description
pmepa1 Predicted to enable R-SMAD binding activity. Predicted to be involved in negative regulation of SMAD protein complex assembly; negative regulation of pathway-restricted SMAD protein phosphorylation; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and early endosome membrane. Is expressed in brain; liver; ventricular zone; and yolk syncytial layer. Orthologous to human PMEPA1 (prostate transmembrane protein, androgen induced 1).

NR:

description
PREDICTED: protein TMEPAI isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007959 True 1994 mRNA 0.53 4 38564475 38570223

Neighbor

gene id symbol gene type direction distance location
AMCG00007956 NA coding upstream 87987 38473716 ~ 38476488 (+)
AMCG00007948 NA coding upstream 477724 38080756 ~ 38086751 (+)
AMCG00007951 LOC107385061,LOC106582629 coding upstream 493632 38067388 ~ 38070843 (+)
AMCG00007947 NA coding upstream 537625 38018892 ~ 38026850 (+)
AMCG00007950 NA coding upstream 549681 38011176 ~ 38014794 (+)
AMCG00007965 NA coding downstream 5899 38576122 ~ 38605013 (+)
AMCG00007963 NA coding downstream 50899 38621122 ~ 38627736 (+)
AMCG00007964 NA coding downstream 66259 38636482 ~ 38661331 (+)
AMCG00007971 NA coding downstream 143538 38713761 ~ 38726766 (+)
AMCG00007968 stx16 coding downstream 187633 38757856 ~ 38767584 (+)
G27561 NA non-coding upstream 82084 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 122404 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 124583 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 536552 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 547331 38016868 ~ 38017144 (+)
G27581 NA non-coding downstream 101648 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 222226 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 285308 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 335831 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 484316 39054539 ~ 39055627 (+)
G27551 NA other upstream 127880 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 141320 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 394329 38168570 ~ 38170146 (+)
G27518 NA other upstream 417625 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1347917 37203870 ~ 37216558 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 122516 38692739 ~ 38708915 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 932856 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 940188 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 969997 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1246804 39817027 ~ 39834952 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G496347 NA non-coding CI01000340 null 18484124 ~ 18489265 (+)