AMCG00007962 (chmp4b,LOC106565064,LOC108243665)


Basic Information

Item Value
gene id AMCG00007962
gene name chmp4b,LOC106565064,LOC108243665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38496492 ~ 38501834 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007962
ATGTCTTTGTTCGGGAAGCTGTTCGGCAGCGGGGGGAAAGGAGGCAAGGGGCCGAGCCCGCAGGAGGCGATACAGAAGCTCCGGGACACGGAGGAGATGCTAACCAAGAAACAGGAGTTTCTGGAAAAGAAGATCGACCAGGAGCTTCTGACGGCCAAGAAACACGGCACTAAAAACAAACGAGCCGCCCTACAGGCCCTGAAGCGCAAGAAGCGGTACGAGAAGCAGCTGACGCAGATTGACGGTACGCTCTCCACCATCGAATTCCAGAGGGAGGCGCTAGAGAACGCCAACACCAACACTGAAGTGCTCAAGAACATGGGCTTCGCTGCCAAGGCCATGAAGGCTGCCCACGAAAACATGGATATTGATAAAGTGGATGACTTGATGCAGGACATCACAGAGCAGCAGGAGCTGGCGCAGGAGATCTCTGACGCCATCTCCAAACCAGTAGGATTCGGAGAAGACTTTGATGAGGATGAGCTATTGGCAGAACTGGAAGAGCTGGAACAGGAGGAACTGGACAAAAACCTGCTGGACATCGTGGGCCCCGAGAGTGTGCCGCTCCCCAATGTGCCCTCAACATCACTACCAGCCAGACCAGcaaagaaagaggaagaggaggatgacaTGACGGACCTGGAGCGCTGGGCTGCGGCCATGTAG

Function

symbol description
chmp4b Enables protein homodimerization activity. Involved in several processes, including midbody abscission; mitotic nuclear division; and regulation of organelle assembly. Located in several cellular components, including cytoplasmic side of plasma membrane; midbody; and nuclear envelope. Part of ESCRT III complex and membrane coat. Implicated in cataract 31 multiple types.

NR:

description
PREDICTED: charged multivesicular body protein 4b

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007962 True 666 mRNA 0.55 5 38496492 38501834

Neighbor

gene id symbol gene type direction distance location
AMCG00007961 ahcy,sahhb,LOC107596784,LOC107729767 coding downstream 4223 38483811 ~ 38492269 (-)
AMCG00007958 eif2s2,if2b,LOC105906812 coding downstream 62429 38427348 ~ 38434063 (-)
AMCG00007955 LOC101480083,LOC100694607,LOC102788290 coding downstream 314919 38176521 ~ 38181573 (-)
AMCG00007954 ergic3,ergi3,LOC107685813,LOC106565050 coding downstream 320193 38165211 ~ 38176299 (-)
AMCG00007953 NA coding downstream 347568 38146519 ~ 38148924 (-)
AMCG00007960 NA coding upstream 10085 38511919 ~ 38514244 (-)
AMCG00007966 pck1 coding upstream 106868 38608702 ~ 38612581 (-)
AMCG00007967 NA coding upstream 133223 38635057 ~ 38645982 (-)
AMCG00007974 NA coding upstream 174840 38676674 ~ 38679151 (-)
AMCG00007973 ppp4r1 coding upstream 177631 38679465 ~ 38692774 (-)
G27557 NA non-coding downstream 56630 38439603 ~ 38439862 (-)
G27491 NA non-coding downstream 479023 38017230 ~ 38017469 (-)
G27463 NA non-coding downstream 719174 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 925611 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 928926 37567203 ~ 37567566 (-)
G27626 NA non-coding upstream 209018 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 247293 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 274327 38776161 ~ 38779752 (-)
G27668 NA non-coding upstream 353714 38855548 ~ 38855777 (-)
G27686 NA non-coding upstream 419136 38920970 ~ 38922688 (-)
G27522 NA other downstream 331950 38161286 ~ 38164542 (-)
G27502 NA other downstream 404614 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 907967 37573034 ~ 37588525 (-)
G27439 NA other downstream 925004 37570957 ~ 37571488 (-)
G27437 NA other downstream 927208 37567617 ~ 37569284 (-)
AMCG00007984 NA other upstream 402924 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 422747 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 530953 39032787 ~ 39049597 (-)
G27720 NA other upstream 552319 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 586723 39088557 ~ 39091895 (-)

Expression


Co-expression Network