AMCG00007964


Basic Information

Item Value
gene id AMCG00007964
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38636482 ~ 38661331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007964
GTCACCTCCCGAGGAGTTCACAGCCACTGCCTGCAGCCTGATGGTGGTGCTGTCCTGAGTTTCCGACTGGTACTGGGAGTAGGGGATCAGGTTGGGGATGAGGAGCAGAGACTGAACTTTCTACAGGCTGAGATGTCCCACGTGGTGCTGAAATGTGATTATGTTGCTCATGCAGAGGACCTGCAGCAGAGTCTGCCAGGGGTGCTTCTCAGTCCATTCTTGGTCTACCATCTGGGCCAGAATAACAACAAGGCCCACCGCACTGATGAAATCAGCAAGGAGCGACTGATCGCCAGGAGGGGACAGGCGTTCTCCATCACCCTGCGCTTCAACCGCACCTTCCGCCAGGGCTTCGACAAACTCCAACTGACAGTGGAGACAGGTACATGGACACTTGGCACAGTCAATCCCAAGGCTCTGGGCTCTGACTCTCGGGGCTCTGAGAACCTGAATGTGAGGGGGGggttaaatgtattacttactGACAGGctgcatctctctgtgtctccagGCCCCCAGCCCTCAGTATCGGATGGCACTCGGTCAGTGTTCGACGTTCCCAGCACGGCAAAGTCCAAATCCTGGGGGGCCACCATCCAGAGCACCCAGCAGAATGAAGTGACCTTGGCTGTCTCCAGCCCCCCCGACGCCTGCATCGGTACCTACACTCTGACCGTGCAGACAGgcatcccccccacctccaacAACATCAACAGGACAGGCTCCTTCATCTTGCTGTTCAACCCCTGGTGCTCTGAGGACGAGGTCTTCCTTCCCCGGGAGGACGAGCGTCAGGAGTACGTCATGAATGAGCACGGCCTCCTGTACCAGGGGCAGCATGATAACATCCGTGCCATGCCCTGGACCTTCGGACAGTTCGAGGACGACATCATGGACATCTGCTTGTGGATGCTGGACTTCAACCCGAGAAAGGGCAACCCTGTGAAGGACTGTGTGGCTCGCAGCAGCCCTGTCTACATCATCCGGGTGCTCAGCGCTATGATTAACTGCAACGATGATAGTGGGGTGCTGgAAAAGGCTAATGATTTCGCCCTTGACATCGACACTCCCAACGTCGACCCCGCCCTCCACATCGACTCCACCCATGTCGACCATACAAACCTGTGGATGTTGTGCAGGAATTTCCATGTGTGGGTGGAGGCATGGATGAGGCGATCTGACCTCTCGGGAGACTACGGTGGCTGGCAGGTTGTGGACGCCACCCCCCAGGAGTCCAGTGAAGGTCTGATGCGCTGCGGTCCAGCTCCAGTCAAGGCTATCCTGGAGGGTCACACCAAAGTGAAGTATGATGTGCCATTTGTGTTTGCCGAGGTCAATGCTGATGAGGTAACCTGGGTTATTCAGCCTGATGGAAGCAAGAGGAAGGTGATGTCCAACCCCAGGTCTGTGGGCATGAACATCAGCACCAAGGCGGTGGGCAAGAACGAGTGCCAGGACGTCACTAACAACTACAAGTATCCTGAGGgttCGGCCAAGGAGAGGCAGGTGTATGAGCTGGCAGTCAAGGGGGGCTGTGACAGACTGGAGCCCAGACCTCAGAAGCCACTGGCCGTGGGACTGAAGTTTGTGCAGAGGAGCAAGCCAATCAATGGCCAGGACATTGCCTTCTCCCTGAGCGTCCGCAGCAACAGCCCCACCGTCCACAGCCTGAAGGTCACCATCACCGCTCACTCCATCTGGTTCAATGGGCTCGCCCTGGCAGAGCTGCTGCGGAAGGAGGAGGACGTGAAGCTGCAACCAAACACAGAGGTTACCATTGCCATCCTGATCCCCTACTCCCAGTACAAGTGGAAAACTCAGGCCAGCACCACCATCAGGCTGCAGGCAATGGCTGTGCCCTCTTCGGGAGCACTGCTTCTCTGGATCcgaaaaaaaaactaatcatGAAGTTCAAAGTGAAGCCCTACAGAGCCGGCAGCAGGAAGCTGGTGGCCAACTTCCACTGCAACCTGTTCAAGAACATCAAGACCTTCCAAGACATCACTGTCAATTGACTTATGACGTATATTCTGCTATTCCTCCCTGTTGTCAAATGCCTGGCACTACCTTTTGCCTCACTGTCTCAGTCAGTGTTGTGCCAAGTTCTGCCCTTGttaaaccacaaaacaaatgtgtaactcTGTGGCTTTGGATTATGTaacttttgaattattatttcattgatATTTAGTGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007964 True 2197 mRNA 0.55 14 38636482 38661331

Neighbor

gene id symbol gene type direction distance location
AMCG00007963 NA coding upstream 8746 38621122 ~ 38627736 (+)
AMCG00007965 NA coding upstream 31469 38576122 ~ 38605013 (+)
AMCG00007959 pmepa1,LOC106582623 coding upstream 66259 38564475 ~ 38570223 (+)
AMCG00007956 NA coding upstream 159994 38473716 ~ 38476488 (+)
AMCG00007948 NA coding upstream 549731 38080756 ~ 38086751 (+)
AMCG00007971 NA coding downstream 52430 38713761 ~ 38726766 (+)
AMCG00007968 stx16 coding downstream 96525 38757856 ~ 38767584 (+)
AMCG00007969 npepl1,LOC107666140 coding downstream 106880 38768211 ~ 38784621 (+)
AMCG00007979 NA coding downstream 200196 38861527 ~ 38898891 (+)
AMCG00007981 NA coding downstream 238997 38900328 ~ 38904511 (+)
G27561 NA non-coding upstream 154091 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 194411 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 196590 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 608559 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 619338 38016868 ~ 38017144 (+)
G27581 NA non-coding downstream 10540 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 131118 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 194200 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 244723 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 393208 39054539 ~ 39055627 (+)
G27551 NA other upstream 199887 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 213327 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 466336 38168570 ~ 38170146 (+)
G27518 NA other upstream 489632 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1419924 37203870 ~ 37216558 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 31408 38692739 ~ 38708915 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 841748 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 849080 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 878889 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1155696 39817027 ~ 39834952 (+)

Expression


Co-expression Network