AMCG00007966 (pck1)


Basic Information

Item Value
gene id AMCG00007966
gene name pck1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38608702 ~ 38612581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007966
ATGCCGCCCCAGATACAGTCCCAGCCGCCGTCCAGCCTGCGCCTCCTGCAGGGAGACCTGGCGGCGCTCAGCCCGGCGCTGCGGGAGTTCATTGAGAGCAGCGCCGCCCTGTGCCAGCCCGACGCACTGCACATCTGCGACGGGTCCGAAGAAGAGAACCGCTGCATCCTGGCGCTGCTGGAGGAGCAAGGCATGATCAAGAAACTGCCCAAATATGAGAACTGCTGGCTGGCACGCACGGACCCCCGGGACGTGGCACGCGTGGAGAGCAAGACGGTGATCGTGACGACCGAGGAGAGGGACGCAGTGCCCTCTGCCCGCGCCGGGGTCAGTCAGCTGGGCCGCTGGATGTCCCCAGAGGACATGGGACCCGTGGGCTCCCCTCTATCCAAGACCGGTGTGCAGCTCACTGACTCCGCCTACGTGGTGGCCAGCATGCGGATCATGACCCGGATGGGCAGGGCCGTGCTGGAGGCCCTGGGCGGGGGAGACTTTGTGCGCTGCCTGCATTCCGTGGGCTGCCCGCTGCCACTCAAGAGACCCCTGGTGAACAGCTGGCCCTGCAACCCCGAGTTGACCCTGGTGGCGCATGTCCCGGAGCAGCGGCGCATCGAGTCGTTTGGCAGCGGCTACGGCGGTAACTCCCTGCTGGGGAAGAAGTGCTTCGCCCTGCGCATCGCTTCCACCATTGCCAGGGAGGAGGGCTGGCTGGCCGAGCACATGCTGATCCTAGGTATCACCAATCCCGACGGTCGGAAGAAGTACATCGCTGCGGCCTTCCCCAGCGCCTGCGGCAAGACTAACCTGGCCATGCTGCAGCCTGCCCTGCCTGGCTGGAAGGTGGAGTGTGTGGGGGACGACATTGCCTGGATGAAGTTCGACAAGGAAGGAAATCTGAGAGCCATCAACCCCGAGAACGGCTTCTTCGGCGTGGCCCCGGGCACCTCTGCCAAGACCAACCCCAACGCCATGGCAACCATCTGCAAGAACACCATCTTCACCAATGTGGCGGAGACCAGCGACGGGGGAGTGTACTGGGAGGGCATGGACCAGTCTCTGCCCGAGGGCATCACCCTCACCTCCTGGAAGAACAAGCTCTGGACCCCTGAGGATGGTGAACCCTGTGCACACCCTAACTCCCGCTTCTGTACTCCGGCCAGTCAGTGCCCGATCATCGACCCGCAGTGGGAGTCCCCGGAGGGTGTCCCAATCGAGGCTGTGATCTTTGGAGGTCGTCGTCCACAGGGTGAGGAACACAATCTGATACACCACAGCAGTGCTGATAGGGCCAGGGGGTCAGGGGACAGGAGTCAGCTGTTCGGCCTGTCACAGGAGTTCTGGGAGGACGAGGCACGTTCGATCCGGGAGTACTTCCAGACGCAGGTGGGCGCCGACCTGCCCTGTGAGATGGAGCGGCAGTTGGAGCAGCTGGAGCAGAGGATACAGCAGCTGTGA

Function

symbol description
pck1 Predicted to enable manganese ion binding activity and phosphoenolpyruvate carboxykinase (GTP) activity. Acts upstream of or within ion homeostasis and response to glucose. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease and type 2 diabetes mellitus. Orthologous to human PCK1 (phosphoenolpyruvate carboxykinase 1).

NR:

description
phosphoenolpyruvate carboxykinase, cytosolic [GTP]

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0009749 response to glucose biological_process
GO:0016310 phosphorylation biological_process
GO:0005525 GTP binding molecular_function
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K01596 E4.1.1.32, pckA, PCK; phosphoenolpyruvate carboxykinase (GTP)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007966 True 1455 mRNA 0.64 8 38608702 38612581

Neighbor

gene id symbol gene type direction distance location
AMCG00007960 NA coding downstream 94458 38511919 ~ 38514244 (-)
AMCG00007962 chmp4b,LOC106565064,LOC108243665 coding downstream 106868 38496492 ~ 38501834 (-)
AMCG00007961 ahcy,sahhb,LOC107596784,LOC107729767 coding downstream 116433 38483811 ~ 38492269 (-)
AMCG00007958 eif2s2,if2b,LOC105906812 coding downstream 174639 38427348 ~ 38434063 (-)
AMCG00007955 LOC101480083,LOC100694607,LOC102788290 coding downstream 427129 38176521 ~ 38181573 (-)
AMCG00007967 NA coding upstream 22476 38635057 ~ 38645982 (-)
AMCG00007974 NA coding upstream 64093 38676674 ~ 38679151 (-)
AMCG00007973 ppp4r1 coding upstream 66884 38679465 ~ 38692774 (-)
AMCG00007972 NA coding upstream 121108 38733689 ~ 38743043 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding upstream 172955 38785536 ~ 38790785 (-)
G27557 NA non-coding downstream 168840 38439603 ~ 38439862 (-)
G27491 NA non-coding downstream 591233 38017230 ~ 38017469 (-)
G27463 NA non-coding downstream 831384 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 1037821 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 1041136 37567203 ~ 37567566 (-)
G27626 NA non-coding upstream 98271 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 136546 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 163580 38776161 ~ 38779752 (-)
G27668 NA non-coding upstream 242967 38855548 ~ 38855777 (-)
G27686 NA non-coding upstream 308389 38920970 ~ 38922688 (-)
G27522 NA other downstream 444160 38161286 ~ 38164542 (-)
G27502 NA other downstream 516824 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1020177 37573034 ~ 37588525 (-)
G27439 NA other downstream 1037214 37570957 ~ 37571488 (-)
G27437 NA other downstream 1039418 37567617 ~ 37569284 (-)
AMCG00007984 NA other upstream 292177 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 312000 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 420206 39032787 ~ 39049597 (-)
G27720 NA other upstream 441572 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 475976 39088557 ~ 39091895 (-)

Expression


Co-expression Network