AMCG00007968 (stx16)


Basic Information

Item Value
gene id AMCG00007968
gene name stx16
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38757856 ~ 38767584 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007968
AATGACACCCGCGGGGGCTGCGTGTAGATAAAGGGCATCCAGAAATAAAACCCTGTGTTCCTTTaattatcaatgtatttgtttttaagaataacACCCTGCCCGGACTGCCAGGATTGAGAGAGAACGGCAGGGGATCCTCGGTTCGTCTCGGCTTTTGGGCGAGTCTGCCCAGGGCTGTCTGTCAGTCCGTCCGTCTGTCAGTCTCGTAGTTCTGTAGCTGTAGAGCTAATTAGTGTCCGGAGTCATGGCAACCAGGCGTCTAACTGATGCCTTCTTGTTAATGAGGAACAATTCTATCCAAAACCGGCAGATATTGGCTGAGCAAGTGAGTACTTTCGACCACCGAGCTCTGAGTACACGTAGCAATGCTGCGGTGAGTCCACTCATCCCGACCGTTGTGCATTGTTGATTTCCCCTCTTTCTcggtgtgcatttgtttgtttgtttgtttgttttggtttattatttgtattgaccTCGACGTGTGTGGAAATGCATTTGGTTTGCATGCTGTAACTGCGTGGTCACTTGTCAAACATTCACCCTATTTCTCACCTGTCTCGGTTacaaacctgtgtgtgtgtgtaggtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgctgctgctgctgctgctgctgctggtggggTCGGGCTCATTGTGATGGTAGCAGTGCAGTTAATCACCAAACACGTAGCTGACATGTTGGGAGTCGTCAGGTGGTACCTCTCTCAGCAGCATGCAGTAGCGCTGCTTTATCCTGTTCGCACCTCGGATGAACCGCGGACGAGCTGTCGGCACACACGCAGGCCGCTGAGCAGTGTCGCCACCCGGGCTGCTCATGTCAGCCGCCTCGGGAATTGTCCAGTCCAGGGCCGCACTGCCGAACGCCTCGGTGCTGCATGCAGAAATACCTCGGCTGTGAGAGGTCAAGTCCCACTGGACTTTGTCTGTAAAATCGTGTCTTGTCACAATTTCCATGCTGCCTTTAGTTATTACACTTGACTTCAAACATAAGCTTCTCTCAGAGAATATATACTCAAtgctttttattgtatgtgtttacATATGTAtagatacaattatttttcataaaggGGTGCATGCTACTGTGGTGCAGTAGTATAAGCATTCTCGGGTTTAGTGCAAACTATTCATTCTGTAGTTGCTATGTGCAGTGGAGTTCTAGAACATGGATGTTCCGTGACCACGCTCTTCTCTGCtgccacagtgcagtgtgtgggggTCACTGCAAGACTGTGGCAGCTAGCCGACATTGGGGCTCTTCAGTGTAAGACTAGTACCAGCCCAGAACAAGGAGGCCTGCCAGCCTCTAAGCCAGTGTGATAGGAGTCCTGCCTGTCTCCAGATCAGTTTAGCTGTGCTCTGCTGTACATTGTGTGCAATGAGGGTTCGTGTAAAGGCTCATCCTTCCCGTATGTGGGCTGTGTTCACGAGTCTCCTGTATGACATCTGTGCTGTTTGAAACCTGTAATACTGTAGATTTGGGTCTGGGAATCAGACACAACATAGGTAGGATGGCCAGTATAGCCACAGAGTCCCTGCTGTTTAGAGTCCCGGGTTAGGACCAGTTACAGGGGACCCAGGGGTGGAAACAGACCCGTGGACAGTGTAGTGTGTAATCAGATGGGGATCCTATGACTCCCCCCCGCAGCCTGGGAGGCTGTGGATGTCACCACTGTGAAAGCCCCTTAACACAGCCCTCCCAGGGACTTGGCTCATCTCTCCTCCCGTCCTGCGGCTTCCGATTTTGCAGTTACATGGATAACTTAATTGTTCtgtttcgtgtgtgtgtgtgtatgtgtgcgtgcgtgcatgcaCGCATTTGTCTGTATGTGGGgtttgctctccctctctctttgccCCATCCCGTGGCCATGGTGGACATGGAGGCCAGAATGTCCACACAGAGGTCATTAACCAATCATTGCCTTCACACCAATCACACTTCCCTCTCTGCTGTCCTCTTTACTGTAATCTCTTCCTCCTGCACACTACGCTGCCGGCCTTTGTGTATCTGTGCTCTGTGCGTGTCAGTCTAGGGCTGCTAGTGACTGCTATGGAGGGCTGGTGTCTCCTTTCCCACTGCCTCCAGTGAGGGAGATGCATTCAGACATTCTCTGCCCTCTGGAGTTTTGGGTGGCAATTTCACAGTGATTCAAAGCTACTGCAGAATGTGTGCTTCTGAATTTATTgacataattgtattattatttaaagtcagAAGCaagatataattatttttgcatcatgatttaaatatcttgctgagcagcagcacacacaATCAGTACAGTCACAGAGACCTGCTAACAGAACTGACTGTGGCTCTCAGCTTGCATTCgttacatattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcttgTGTACAATGTTGTTCTGCATGCAGTTGCACTTTGCTGTATGTTGGCTCTGTGTGGGGTGCAGGACGGGTGAGGGTGGAGTGAGTGAGAGGGGTGGGCGAGGATAGCAGTAACCCAGAGCTCTGTAATGGCGCATGTCTGCAgctaaatgaaaaatgcaatgtgCTACTAAtgttcttggctgaggtgacgATCAGTGCAGGGGGTTGGGCtgtgtgttcttgtgtgtgtgtagtgtgtcaCTGTAGTGTTGATGGcaggtgtgctgtgtgttgaggCCGGCTGTGCAGTGTGGTGTTGAGGTGCTGCTCGGGCTCGGGCTGACTTGCTCTCACTCTCCTGTCCTTCTCACTCCTCTCTTCTCATTGGATGGGGCTCTGCTGGGATCTGCCAATCACCTTAGGAGCTGGATGAGGTACTGTCCAATCACATTCTCTATctccttttatgttttattgttgggGGCAGGGGCCTTCTCTGAACATTGTGTAAAGCTTGCACTCTGTGCTGAGAAAATCTCTTTCTGATTCTGTGATTTACAACTGATTCGTAACCTTTTCCCTATGCCATCATACAGTGTTTTCTGAAGAATACCTTGAAAATACTTGGGACAAATGAGTAGCCCAGCTAGTACTGTGTGGtcattgatgatgatgatgatgattatgattattattaaggaAGAATAGCTGTCACTAGTTTCTGCAAGCTTATAACCAAACCAAACCTTATAGCCAAAGGGGAGCTTAAGCTGTTAGAAAAATACTGAATGCATTGTCTTTGTCTCCAAGCAAACACACCTCAGAACTTggtatattacatttgtttttctatttttttcccccactctccTTGTCTTCACCCCTTACCTCTCTCCCCATCCAACTTCCCtcaaaccccccccaccccccgcctcTCTCCCAGCTGGCTGATGACCGCATGGCCCTGGTGTCAGGGATCAGTTTGGACCCAGAGGCTGCCATCGGGGTCACCAAAAGACTGCCTCCCAAATGGGTAGACGGAGTGGACGAGATCCAGTATGACATCACGCGCATCCGGCAGAAGATGAAGGAGCTGGCCAGCCTGCATGACAAGCACATGAACCGGCCCACGCTGGACGACAGCAGCGAGGAGGAGCACGCCATCGAGATCGCCACGCAGGAGATCACACAGaTGTTCCACCGCTGTCAGCGGGCGGTGGTGGGCCTGCAGCGGTGCTGTGGCATGAAGAATCGCGAGGAGCGCTCCAAGCACTTCTTCGACACGTCAGGTCCCCTGGTGGAGGAAGACGAGGATGACGCGCTGTACGACCGGggTTTCACAGATGACCAGCTGGTTCTGGTTGAGCAGAACACTGTTCTGGTGGAGGAGCGTGAGCGGGAGATCCGGCAGATCGTTCAGTCCATCTCCGACCTCAACGAGATCTTCCGGGACCTGGCGAGCATGGTGGTGGAGCAGGGCACAGTGCTGGACCGCATCGACTTCAATGTGGAGCAGGCCTGCGTCAAAACAGAAGACGGTTTAAAGCAGCTACAGAAGgcAGAGCAGTACCAGAAGAAGAACCGCAAGATGCTGGTCATTTTTATCCTGTTTGTCATCGTCATTGTCCTCATCCTCGTCCTGATCGCTGTGAAGGCCACGTAAtccttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgagacAGTGACCCAGCCTGTACTGCTAACCCCTCTGCTGCCTTGGTTGAATGTGTATTAAGAACTTATTAACAAACGTAAGTAATTAAGTAAGAGGACCCATGCTGATCCCGTTTGCACAGCTAGTACTGTAGACCCAGGAACCCAAGCATGGTTCGTCCCAGTACCAAGCCATAGTCTATATAAACACACTGCCCACTCTCTCCTTGTCTGAGCTGACCCGCCTCAGCACTGTATTGCAGGGAGCCCTGTTTGTGAATCACCCACCCAGGTATCACTGCCCAACCTCTAGCATTCTCAGCCCTAGTCCTAGGtttATCTGCTCAAACAGGCCTCTCAACAACTTAATTGAGACTCATATTACAGAAGCTGAGGCATCCGGACTCTTCAGCAAACTGTCGAGAGCCAGTGAGTCAAGGAGAATTGCAATTGTAACAGAAACTAGTGGGATGGTGGGGGGCGGGATCAGGTCTGTGAAACACTACTTTTGGCCCCACCCAGCCAGGTTGATTAGCCGATTACTGATTTGAATGATCTCGTCAAGAAGCAGGGGGGCCCAGAGAGCTACGCTGGGATGGGTTTGAGGGGGGACGGGGTTAGATTAGAGTCAGACGGACAAAACACAAGCTACAGATTCTGCTTGCCCTTCACTACATTGGAACACACTGGACTCTCCGTGTATGACCTCGTCTCTGTCGTCGTGTTGATTGCAGCCTCCCTCCTGCTTGAGCCATGGTTTGGTCTTGCTCTGTCCAGTTTGGTTTTGTATCTGTGTTTGCCCCTCGTTGGCTTCTTCTCGGGTTGCTGTGATTAGCTTATCTCTGCTGTCAGTCAGAGCTGCTGTGCCTAAGGTATAGCCGTGGCCCTGAATTTTTGGACCGGCATGAGCAGGTCACCCCAGCTCCTGGAGAGCCATGGGGTCTTCTGAACTGCGTtgtctataaaaaaaataataatctaaaaacGAATTAACAAACACAGTTACAGGACTTCACGGACCAACACCTACAAACTGAAAAACTAGGGCCAGGTTCAATTCTTTTTATATCAGTTCGCTTTGTGTCTGATCGGAGTACCATTCTTCTAACTCAAAACACTTATCCtaaaaaacactatttaaacTGGGTCATATCGGTATTCTTTCTTTAAGCCTCTCTGTTTTACTGGGCGTATCCTGTATGTTACACATCAGTCTGTTGGATTGTCCTGAAGCCCTCTTCTTTCTGCCGTATCCTGTGATGAGTGAATAATGTACATCTGTAGACCTGTGAGGAGAGAAGTAACACTTAAAGACATTTCACAGAGGATAGGAGAACCCCCCCAACCTGGGTTGTGGATTGTACGATTTATATGGGGGGGGAAATCAGGTTGGAAATCATCCTCCCTACTGCCCCTGTCTgcttcagtgcagtgtgtggtctctgtttgttgtgttgtgttgctgtgctgttgtgtacCGGCTGAGCTTTTCCCAAGGGTGGCAGCAGcacagtttctgttttttttatttttatttgagatGAAAGACAGTGAAGACTGTCCTGCTTTTAAGACAGACTGTGCctctttttgttcatttgtttgttttgagtcaGATTATATttgatcttattttaatttatttttttctaatcttttttatttttatctttgggggagggggaagagggGAAGTGCAAGTTAAAAACTCAACCGGAAGAGGGCTTGTTCTTCTATTGTATTCCACCATGGCTGGGTTTGATGGGCGCTGCCTGCACAGCAATCCCTCAGAAAACAGCCTGCCCCCTTCACAGCCACGGGACCCGCCAGGCAGCTGACCGGCACAGTCCTGCGCCTGAACGACAGAGACACAGCTGCACTCAGAGGTGTATCCAAAGCAACGCCTTGGACTTGATATCATCTCGTTTGTCTTGAGAGGGCTGGCAGGTCTCTGTGTGATGATGGAGCTCTGCGCGCACCTGGGCCGTGTTGCTTCACTCACAGATTGTTTCTCTGTGGAGGTACCAGCTGTCTCCACTGCGAGACTCCTGAACTGAACCCCCCGGCGCTGGGACCAGAACTGAGAGCAGCCTTAATCATGGCTGCAAATACTACTGAAGGGAATTCTGCATGCCAGGAGAGGCGGGGGGGAGGTTGTTGATTGATGGTTGGTTGGTTGAGTGACACACTCCACTATCTAAATGtagctctcacacacactcgcacttaataataacaatgtaaagAAGATTtgaataaatagaaaatgtcaTTCCATTCCTTCCCAGACCAGGCTGTACTTATACCTTAATGTCATTAAATTCTTAAAGATTGGCTGAAAGAATCCTCACCTGGGCTTTCAGTTAATCTGGGAAGcacatacccccccccccccccccccccccccccccctcctttggttaagtaattaaatcaaattcagtCATATCGTTCATGAAAAATGGACAAAGGATCACTTTCCCAGTGTTTGAACTCTAAAGACTGGCACCTGCAGACCGCAGTCCTCCTGCGTCCGCCCCTCGTCTCAGCGTTGTCTGTGTGGGGCTCCCACAGGATTAAGGACCAAATGTGTCTCCACTGCTCACTTCTCATCTGCCTTTGTCTCTCTCCTGTCGGGGTCCGATGTCATGCTGTTGTGGCctgtaaaaataagtaatggccACCAACCCCCCTCCAGGTGTGATATACattggatatatttttatacctTTGCAAGCAGTTTAAATTCCATTCCTTGTGCTTTAAGTGGATATACTAAAATCTTCTGTTagtggtgtgtgtgagtgagaatCGGAGAATGTCTGTTGTTTGTCGAGTGAGTGACCCACCCTTGTGCAACTGAACAGTCCTAATCCACAGTCCTGAAACGTTGTGCAAAGCATCCTGAACCCAAATGAGCCACCAACTGgagaatgtttaaaacaaaaatataaataaatgaattaaaatattta

Function

symbol description
stx16 Predicted to enable SNAP receptor activity and SNARE binding activity. Acts upstream of or within pronephric duct morphogenesis. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Is expressed in pronephric duct. Human ortholog(s) of this gene implicated in pseudohypoparathyroidism type IB. Orthologous to human STX16 (syntaxin 16).

NR:

description
PREDICTED: syntaxin-16 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08489 STX16; syntaxin 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007968 True 7102 mRNA 0.49 9 38757856 38767584

Neighbor

gene id symbol gene type direction distance location
AMCG00007971 NA coding upstream 31090 38713761 ~ 38726766 (+)
AMCG00007964 NA coding upstream 96525 38636482 ~ 38661331 (+)
AMCG00007963 NA coding upstream 130120 38621122 ~ 38627736 (+)
AMCG00007965 NA coding upstream 152843 38576122 ~ 38605013 (+)
AMCG00007959 pmepa1,LOC106582623 coding upstream 187633 38564475 ~ 38570223 (+)
AMCG00007969 npepl1,LOC107666140 coding downstream 627 38768211 ~ 38784621 (+)
AMCG00007979 NA coding downstream 93943 38861527 ~ 38898891 (+)
AMCG00007981 NA coding downstream 132744 38900328 ~ 38904511 (+)
AMCG00007978 prelid3b,LOC108231491 coding downstream 141701 38909285 ~ 38917976 (+)
AMCG00007980 NA coding downstream 153452 38921036 ~ 38925671 (+)
G27581 NA non-coding upstream 28824 38671871 ~ 38729032 (+)
G27561 NA non-coding upstream 275465 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 315785 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 317964 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 729933 38027380 ~ 38027923 (+)
G27648 NA non-coding downstream 24865 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 87947 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 138470 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 286955 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 291947 39059531 ~ 39059734 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 48941 38692739 ~ 38708915 (+)
G27551 NA other upstream 321261 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 334701 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 587710 38168570 ~ 38170146 (+)
G27518 NA other upstream 611006 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 735495 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 742827 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 772636 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1049443 39817027 ~ 39834952 (+)
G27974 NA other downstream 1289048 40056632 ~ 40059386 (+)

Expression


Co-expression Network