AMCG00007970 (rab22a,LOC107596793)


Basic Information

Item Value
gene id AMCG00007970
gene name rab22a,LOC107596793
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38692739 ~ 38708915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007970
GGCCTACCCCCGGATTGatattgttttagtgttttacaattcaaaaatacataacGAAACGACggagaataaaaacatgttttgggaggaagaaaaaaaaaatcctcccgTGTCATGTGACCATTCAGGGGTAGTCCAAGATGGCGTCTGTGTTATTAAAATTTGGTCCAACTGAAAGAAATAGTCTGCgttcaaaataaaagaaagaggcGTTTTCCAGCTGAAGAGGGGCCGAGAAAAAACAAGTCGGcgacactttttttgtttttgttttaattttttattatatttatgtatcctGCCCCAAACCTGTTTTCACCCGTGTCTTTATTGAGCCAAGTTGggattgtatatttttatattgttggCATGTTCATGAAGTTTTTATTACTCCGGAGATCGATATGGCGCTGAGAGAGCTGAAAGTTTGTCTTCTTGGGGACACTGGGGTGGGGAAGTCCAGCATTGTATGGAGGTTCGTGGAGGACAGCTTTGACCCCAACATCAACCCCACCATTGGAGCATCCTTCATGACAAAGACGGTCCAATACCAGAGCGAGCTGCACAAGTTCCTGATCTGGGACACCGCAGGCCAGGAGAGGTTCCGGGCCTTGGCACCAATGTACTACAGGGGCTCCGCAGCGGCCATCATTGTTTATGACATCACTAAAGAGGAGTCTTTCCAGACACTGAAGAACTGGGTGAAAGAGCTGCGGCAGCACGGCCCTCCCAACATCGTGGTGGCCATCGCTGGCAACAAGTGTGATCTCACCGACTCCAGagaagtcCTGGAAAAGGATGCCAAGGACTACGCAGACTCCATCCATGCCATCTTCGTGGAGACCAGTGCCAAAAACGCCATTAACATTAATGAGCTCTTTATAGAGATCAGCCAGAGGATCCCAGTGACCGACGCCAGCGGGGGGGCCGCAGGGAAGGGTTTCAAGCTGCGTAGACAGCCGTCCGAGTCCCGGCGcagctgctgctgatgctgcgATTGCCCCCAGGCCCCTCTAGT
>TU34527
CTTGAATTGAAAACTGAACTGGCACCAGTGTCAGAGATACTTCCTGAAACCACTTCCTGAATCATCGAcggggttttatttttttaaaagagtttTGGATTTGGGGCCTACCCCCGGATTGatattgttttagtgttttacaattcaaaaatacataacGAAACGACggagaataaaaacatgttttgggaggaagaaaaaaaaaatcctcccgTGTCATGTGACCATTCAGGGGTAGTCCAAGATGGCGTCTGTGTTATTAAAATTTGGTCCAACTGAAAGAAATAGTCTGCgttcaaaataaaagaaagaggcGTTTTCCAGCTGAAGAGGGGCCGAGAAAAAACAAGTCGGcgacactttttttgtttttgttttaattttttattatatttatgtatcctGCCCCAAACCTGTTTTCACCCGTGTCTTTATTGAGCCAAGTTGggattgtatatttttatattgttggCATGTTCATGAAGTTTTTATTACTCCGGAGATCGATATGGCGCTGAGAGAGCTGAAAGTTTGTCTTCTTGGGGACACTGGGGTGGGGAAGTCCAGCATTGTATGGAGGTTCGTGGAGGACAGCTTTGACCCCAACATCAACCCCACCATTGGAGCATCCTTCATGACAAAGACGGTCCAATACCAGAGCGAGCTGCACAAGTTCCTGATCTGGGACACCGCAGGCCAGGAGAGGTTCCGGGCCTTGGCACCAATGTACTACAGGGGCTCCGCAGCGGCCATCATTGTTTATGACATCACTAAAGAGGAGTCTTTCCAGACACTGAAGAACTGGGTGAAAGAGCTGCGGCAGCACGGCCCTCCCAACATCGTGGTGGCCATCGCTGGCAACAAGTGTGATCTCACCGACTCCAGGCCAGAGGATCCCAGTGACCGACGCCAGCGGGGGGGCCGCAGGGAAGGGTTTCAAGCTGCGTAGACAGCCGTCCGAGTCCCGGCGcagctgctgctgatgctgcgATTGCCCCCAGGCCCCTCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccaccatccccCATTCCCTGAAACCCCTGAAAACACAGGAGGAAGCCCCACGGTACCTCCACTGAGAACTCGCCCactacatgcatacacacacccCTACACAGTGTCGTCCATCCTAGCAAGGACTCCATCCAGCCAGGTATCCAATCCACATGAAGAGCAACATtgagggatggtgttctcgttttgtttcattattattattattattattattattattattattattattagagttatacagatatacaaaaaaacatgtctgtcGTTCCTGCTCTTGTCTTGATTCTGAACCAGAGCCTCAGTCAGGAAACACTCTGCACTCTACCACCCTTCCCTCCACACCCCACACCACAaccccacacctccccccaaCAAGACCCGGTCCAGAATGTGCACAAAGCTGCTGCACAGCTTCTCAGAAACAACAAGGAGGATCagaagtgtaaaataaattattatattgcaGACGTGTGAAAAAGTGAAAGTAGTGGATTTCCCCTCTGCTGTTTCCAGGTCAAGCTCATGAACTCCACTGCTCTTCGTGGCCCCAGACACAGTTCACCCCTTGTTGAGTTTTTTCCTTGTGCTGTAGCAGCTACAGGAGATGGGGGTGTGTTGCTTCatccctttttcctttttcttttgttaacaAGAAGACAAGATGGCGATGCATTGTTGTTGAATTGTGCCAAATCTTTTGTCtgttatattttaagtttttttgaatatatatgtcTATCTACACATTCAAGCTGTACATGGACCTGTGATGACTGTTACTGCAGAAGAGACAGCAATGGGTGGTGATAAAGCACTTTTGGACAGAACTGCAGATGGGAAGTCTAAACAATCCCCAGACAGAGTTTGATCTTTCCTCGTCACGGTACAGGAAACCCACGGAGTTGGACAGTACAGCGTCATGTGGGAGCCAGCAGGGGGGGCTCTGAGGgttgagggtgtgtgtgtgcactccTGACTTGAGTGCACACCTGTCACCACCTCTCCCTGTCCCCTGCTGAGTGGCAGGGCCATCCCCCCAGACAGTGACTGAGCTGGATTAGGGAAAGCCCTGGGGCCCCCATACACCTGAGAAATGGCAATAGCTGCACAGCGGGGCTACAGAAAAGGAGATTCCACCCAgctgcactttaaaaaaaaatgatgacacAGTCACAATAACAGTAAGACCGATACTGAGCGGGCAATGGGTGTTGGACACACGCAgGTATGGTAAGCAGCTGCCACGCCTACATCCCCTCAGCCCTCAGGAGCTCCTTGTTACTCGATGGACTCCTCCAACACTGTTCTCACTACTGGTCTGGAAAATTCTAAATCGATTGGAGTTGTGAAATTCCAGTCAGTGGAATGGTCAGTGCTGAGCCTCTCCATGGCCTTGCCTGGGATCGAGGGCTACTGCACTGTTCCCCAGGGGAGGCCAGTGCCATGTCCGCTCACCCTGCCGCTGCGTCTGAACGTGATGAAGAAGGGGTGCGTTAGTAGCTTcggttaaaataaatcaataaatacctTTCATGGTTCTGGAGTGTGGAGTGTTTACTTAGATGTGTCTGCAGTAAGGCGGGAGAGAGGTTGGTTGTTAGTTGTCATCATTCATGAATTGACCCAttgattgtgtatgtgtgggtgaCAGCTGCTATATTGAGCAATGATGGCTGGAATGGATGCACTTTTTGTATCAGTCTGATGTTGGCATGTTGTGCCCAGATGATCAACTAACTCCTCTGGTTtcgtctatttttattttattttcctttgtacCAGTTATGATTCTTAAGTGAAGCCATCAGTGGGTTTTAATAAGTCTTGAAACGAGCCACTTTAcgccttattttatttaaatgtatttttattacaggGGGAACTCTGAGGGTATCGGTTAGCGCACTTTTGCGGTTTGTGTATAaagtttttatttccatttcattttaagtCATTTAAGTACACAGCATGTGTCTGGTGTGCCTGTGAGGGcatgctgtgctgcactgtagTGCTCTGTCTTGGTGCATCGCTGTATTACTCTGTGATGGCAGTGTTGCAGATTAGACAGTTAAGTGCCCTCTGAAGGTATGGGATCTGGGGACCCCCAATAACCACTCCCTAACTACTGGGTCAGTAGTTACACAGTAGGACTTCAGCCTGATTCAAGGCCAGTCTGACACTCCATTAAGTCAATTTTAAGGATAGGTGAAAGTGTGAATAGGGTTCCATAACTGGTCTGTGATGATTTTAATTCAATGAAGTACGGAACGCCTTGTTTCTGATTATATCATAGGGTTATCTTTCCaagcttttttatgtattaatttctttTGCTCCAGCGTTTCCTGCATGCGTCAGCATAATTGTAAAGGTGCAAAATCCAGCAAAAGTGCGTCTGTGTAAAGGGAGTAAAGTTCACAGGATGTGTGGTGTCGGGATGAAATAgtggagagaggaaaagaggTGAAAAGGCAGTATTTTCAcatgtgcttttgtgtgtgtgtgtgtctgtctgtctgtctgttttccaCTGCTACTGTTCTTGTGAGCTTAAGCCAGTGCACAGTCACTGATTTCACCAGATGGGTGTGTGATGTGACGGAGACACTGAGTAGTTCCCACAAAGCAACGTCCACATCTGCCCCCTTCCCCCCGCCATCCTGTGTAAAGGCAAGGATGTACATGGCAGCCACTCACCTCTGAATCACTGGTACTGAGAGACTGTGGGTTTGGCGTTCCAGCCTTGATCTGTTCATTCTCCTGATTCTCCTGTGGGGGGGTAGAGAGAGTAGAGAGAGGCCTCTTCTGAGTTCTACCTGTGTGAGAGCTGTCACCGACCCTGCCTTCGCTCACAGCTGCAGTCACCGTCCAGCCCACCCTTCACACCACAGCCTGGGTGTCCTAGCAGGCTGCTGATATCAGACCCCTTAGCTAGTCAGCTCTGGCTTCTCTGCATGAAATATGTCCCCCTTGCTtgctatatttaatatttttgttactattttattttgttttgttggtgtgtTTGTAAAAGACAGATTGTCCATCTGATCTGCACAGCTTTACAAAGCTCTTTACAATGGTCCTAATCTTGGGCTGGTCCTGAGACTGTGTAGCAAGTCCTTTATAATTAATGAAGTATGTGTATGCAAACCTATAATTGTACATTCAAAACCCAAAATGAAGAATGAATATCTACTCTTGTTTAAGAAGGATAGCTACCATTATTTACCATTAGATGGCAAGggcactgtaataataataattacaaatctCAATTCCACCTATCATTTTTGTTATATTGTGCTTCAATATTTTCCTATTTCCTAATGATTGTaaaaacaaagagacaaaaCAAGATGAATGCTTGAAATCACTTATGTTTACTGTGTATTTCTGAATGTGCAAAAAGGGAAATGTCAAACCGTTTActaataaaatcattattaaagAAAA

Function

symbol description
rab22a Predicted to enable GTPase activity. Predicted to be involved in endocytosis and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human RAB22A (RAB22A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-22A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007970 False 1018 mRNA 0.49 7 38692843 38704205
TU34527 True 4514 TUCP 0.45 7 38692739 38708915

Neighbor

gene id symbol gene type direction distance location
AMCG00007964 NA coding upstream 31408 38636482 ~ 38661331 (+)
AMCG00007963 NA coding upstream 65003 38621122 ~ 38627736 (+)
AMCG00007965 NA coding upstream 87726 38576122 ~ 38605013 (+)
AMCG00007959 pmepa1,LOC106582623 coding upstream 122516 38564475 ~ 38570223 (+)
AMCG00007956 NA coding upstream 216251 38473716 ~ 38476488 (+)
AMCG00007971 NA coding downstream 4846 38713761 ~ 38726766 (+)
AMCG00007968 stx16 coding downstream 48941 38757856 ~ 38767584 (+)
AMCG00007969 npepl1,LOC107666140 coding downstream 59296 38768211 ~ 38784621 (+)
AMCG00007979 NA coding downstream 152612 38861527 ~ 38898891 (+)
AMCG00007981 NA coding downstream 191413 38900328 ~ 38904511 (+)
G27561 NA non-coding upstream 210348 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 250668 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 252847 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 664816 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 675595 38016868 ~ 38017144 (+)
G27648 NA non-coding downstream 83534 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 146616 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 197139 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 345624 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 350616 39059531 ~ 39059734 (+)
G27551 NA other upstream 256144 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 269584 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 522593 38168570 ~ 38170146 (+)
G27518 NA other upstream 545889 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1476181 37203870 ~ 37216558 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 794164 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 801496 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 831305 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1108112 39817027 ~ 39834952 (+)
G27974 NA other downstream 1347717 40056632 ~ 40059386 (+)

Expression


Co-expression Network