AMCG00007971



Basic Information


Item Value
gene id AMCG00007971
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38713761 ~ 38726766 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00007971
ATGGGCGCCAGCGGCTTCTGCTTCGGTTACAGGGGCGCCTTGGAGTGTCTGCCTCTGCTGCGCTTTTCATGCTGGCACCATCAGTATTGTCTCTGTGCTTTCAGTGCCCTCAGGCTGGGCCCTGCTCTGACCCCAGCCATTGGGCTCCTCTTGGGGCGGTTGCTGTTGCCACCTGCGGGTTGGCTCTTCCTGCCAGTTGCTGAGCCGTTCCTGTGCCCACCTTTCCTTCCTGTGCTGTGGATCGGGGTGGAGGGGGTAGTGCTGTCTCTCGGGATCAGGCAGCCGCTCGTTCCAATGAACGTATGCTTCAAAGTGAAGACAACTGCACCGCGGCGTTACTGTGTGCGGCCCAACAGCGGCGTGATCGATGCTGGCACGTCCATCAACGTGTCTGTCATGCTACAGCCTTTCGACTATGACCCGAACGAAAAGAGCAAACACAAGTTCATGGTGCAGTCCATGCTGGCCCCTGCTGAAATGACTGACATGGAGGGAGTGTGGAAAGAAGCGAAGCCGGAGGAGCTGATGGACTCTAAGTTGCGATGTGTCTTTGAACTTCCGTCAGAGAACGAGAAAACGCACGACACCGAACCCAACAAGATCGTGTCCTCCAGCATCCTGAAGTCAGAGTCCTCGTCCCTGTCCAAGTCCATGAACGCCTCCCCGGACGAGGGGGAGGTAAAGATCATCGATGAGTGCAAGAAGCTGCAGCTGGAGGTGCAGCGGCTATGGGAAGAGAACAAACAGCTCAGGGATGATGACGGGCTGCGAATGAGGAAGAGCACGGCCATGTCAGCAGCGCACTCCTCCTCTGCTTCCGGCTCCATGGTGAAAGAGGAAGGCCCCAGTACCAGAATGCTCGCCCTCTGTGTATTATTCTTCATCATCGGTGTAATTATAGGAAAGCTGGTCTTGTAG

Function


GO:

id name namespace
GO:0036269 swimming behavior biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00007971 True 918 mRNA 0.56 7 38713761 38726766

Neighbor


gene id symbol gene type direction distance location
AMCG00007964 NA coding upstream 52430 38636482 ~ 38661331 (+)
AMCG00007963 NA coding upstream 86025 38621122 ~ 38627736 (+)
AMCG00007965 NA coding upstream 108748 38576122 ~ 38605013 (+)
AMCG00007959 pmepa1,LOC106582623 coding upstream 143538 38564475 ~ 38570223 (+)
AMCG00007956 NA coding upstream 237273 38473716 ~ 38476488 (+)
AMCG00007968 stx16 coding downstream 31090 38757856 ~ 38767584 (+)
AMCG00007969 npepl1,LOC107666140 coding downstream 41445 38768211 ~ 38784621 (+)
AMCG00007979 NA coding downstream 134761 38861527 ~ 38898891 (+)
AMCG00007981 NA coding downstream 173562 38900328 ~ 38904511 (+)
AMCG00007978 prelid3b,LOC108231491 coding downstream 182519 38909285 ~ 38917976 (+)
G27561 NA non-coding upstream 231370 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 271690 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 273869 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 685838 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 696617 38016868 ~ 38017144 (+)
G27648 NA non-coding downstream 65683 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 128765 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 179288 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 327773 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 332765 39059531 ~ 39059734 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 4846 38692739 ~ 38708915 (+)
G27551 NA other upstream 277166 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 290606 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 543615 38168570 ~ 38170146 (+)
G27518 NA other upstream 566911 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 776313 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 783645 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 813454 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1090261 39817027 ~ 39834952 (+)
G27974 NA other downstream 1329866 40056632 ~ 40059386 (+)

Expression



Co-expression Network