AMCG00007974


Basic Information

Item Value
gene id AMCG00007974
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38676674 ~ 38679151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007974
ATGGCAGATTCCGGCAGGGCATCCAGGAGAGGCGATTCCCGTCGGGCGGTGCGCGCTGGGGGGCCGCAGGACAGGGACTCGAACCCGGGGCTGTTCAGCGTGTGGGTGCGCCTGCGCGACACGGGGGAGCTGTTCTCGGTGCCCCACTGCCGCGGCGGCACCCGGGTCCGCGATCTGAAGGCGGCGCTGGAGCTGCAGGCAGGGGTCCCGGCGGAGCTGCAGAGGCTGTCCTACCTGGACCAAGGTGACATGCCGGAGGAGTCTACTCTGAGGTACAATGACGTGGTCCCCGGGGGCACCCTCACCCTGACGGTGTGGCACTACGGTGGATGGGCGGAGCTGGTGAAGGCGGCCGCCGGTGGGGACGAGCGGAGGCTACAGTCTCTGGTGTGGGAATCTGACACTGGAAAGGCGGGGGGACAAAGAGCCTTCTCTGCCCTGTTCATCACTGCCCACCGCGGACACCTGATGGCCCTCCGCCTCCTGCTGCACGGTGGGGCAAATGTGAAGATGCAGACGAGGCTGGGGAGGGGACCTCTCCATGTAGCAGCGGCGCAAGGACGAACCCAGTGTGTGGAAGAGCTGCTGCAGGGGGGGGCGCCGGCACAGCAGACAGACACCGATGGGTTAACACCCCTCTGCCTCGCCACCATGCTGGGGCAGAAGGGCAGCGTGCGCCAACTGTGCCAGTTTCAGTGGCAGCAGCGGGCGGCCGGGGTGCGGCTCCGGAGCCACCTGGAGCCGGGAGAGCTGCTCGCCCACCAGCGCTTCGACTCGCGGCTGAAGACATGGAGCCGCGGACCCCAGGCCCAGATGTACATGGCCAGCCTACTGAGGAGGGGGGAGTCTCAGGGCACCGCACTGGGTGGCCCCGCAAACAGAGACGTTCATTCAGGAGACACTGACACAGCAGAGCACGGACGGAGCGCAGTGCACTCCTGTAACTGA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007974 True 948 mRNA 0.67 4 38676674 38679151

Neighbor

gene id symbol gene type direction distance location
AMCG00007967 NA coding downstream 30692 38635057 ~ 38645982 (-)
AMCG00007966 pck1 coding downstream 64093 38608702 ~ 38612581 (-)
AMCG00007960 NA coding downstream 162430 38511919 ~ 38514244 (-)
AMCG00007962 chmp4b,LOC106565064,LOC108243665 coding downstream 174840 38496492 ~ 38501834 (-)
AMCG00007961 ahcy,sahhb,LOC107596784,LOC107729767 coding downstream 184405 38483811 ~ 38492269 (-)
AMCG00007973 ppp4r1 coding upstream 314 38679465 ~ 38692774 (-)
AMCG00007972 NA coding upstream 54538 38733689 ~ 38743043 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding upstream 106385 38785536 ~ 38790785 (-)
AMCG00007976 NA coding upstream 114953 38794104 ~ 38817732 (-)
AMCG00007977 NA coding upstream 151954 38831105 ~ 38836137 (-)
G27557 NA non-coding downstream 236812 38439603 ~ 38439862 (-)
G27491 NA non-coding downstream 659205 38017230 ~ 38017469 (-)
G27463 NA non-coding downstream 899356 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 1105793 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 1109108 37567203 ~ 37567566 (-)
G27626 NA non-coding upstream 31701 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 69976 38749127 ~ 38767568 (-)
G27661 NA non-coding upstream 97010 38776161 ~ 38779752 (-)
G27668 NA non-coding upstream 176397 38855548 ~ 38855777 (-)
G27686 NA non-coding upstream 241819 38920970 ~ 38922688 (-)
G27522 NA other downstream 512132 38161286 ~ 38164542 (-)
G27502 NA other downstream 584796 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1088149 37573034 ~ 37588525 (-)
G27439 NA other downstream 1105186 37570957 ~ 37571488 (-)
G27437 NA other downstream 1107390 37567617 ~ 37569284 (-)
AMCG00007984 NA other upstream 225607 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 245430 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 353636 39032787 ~ 39049597 (-)
G27720 NA other upstream 375002 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 409406 39088557 ~ 39091895 (-)

Expression


Co-expression Network