AMCG00007980


Basic Information

Item Value
gene id AMCG00007980
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38921036 ~ 38925671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007980
GCGGCCTGCGGGCTGGGGAAGACCATTTAAATCAGTGAATTCATAAAATTGGGTGGATTATTTAgcagattcaaaacaaaacGTCTTTGTTAGACGATAAAACACTGATTTCCAGACGATAGGACGGGGGAGGATTGTTCGCAGGAGGGGGATATTCAGACCCTTTCATCCTTTGGCCATCATATTCAGAGTGACATGGATGCAGTGAGAACCGGGAAGCCACTGTCTGGTTATGGGAAGATGAGTGGTGACGGACCCAAACGGGTTCCCGTGTCCCAGAGCCGGCAGGGAGCAGCAGTGACCCCTTCTCAGCGTGTGTTGGGCGTGTCCAATGGACCTCAACGAGTCCAGCGCCCGGTAGGGCAGAACAAACCCCTACAGACCCCGGCCCCCCGTGCCAAGACCCTGAACACCTCCAACCAGAACACCCCCCTGCCTGCACCCTCGCAGCCTGAGCCCAAGCCCAagagccagccagccagtctCCCTGTGCATGCTCCTGCAACCCTTGCTGCTCAGGAATCGAGCAGGGCCCCCGAGCCTCCCAAGCAAGAGAAGACTACTGATAAACCTGCAGCTACTGAACTGACCAGCAACTCTGGTTCCAATAAGAAGCGGTGGACGCTGGAGAACTTCGATATCGGCCGGCCTCTGGGCAAGGGCAAGTTCGGGAATGTATACCTGGCCCGGGAGCGCCAGTCCATGTTCATCCTTGCCCTGAAGGTGCTCTTCAAGAAACAGCTTGAGAAGGCAGGTGTGGAACACCAGCTCAGGAGGGAGGTGGAGATCCAGTCGCACCTCAGGCACCCCAACATCCTGCGCCTGTACGGGTATTTCCATGACTCGTCGCGGGTGTACCTCATCTTGGAGTTCGCGCCCAAGGGGGAGCTGTACAGCGAGCTGCAGAGATGTGTGCGCTTCGATGAGCAACGCAGCGCCAAGTATATCACTGAGCTGGCCGACGCGCTGCAGTACTGCCATTCCAAGAAGGTCATCCACCGGGACATCAAGCCCGAGAACCTGCTGCTGGGCGCCAACGGGGAGCTGAAGATCGCGGACTTCGGCTGGTCGGTCCACGCGCCCTCCTCCAGGCGGTCCACGCTGTGCGGCACTCTGGACTACCTGCCACCCGAGATGATTGAGGGGCGAACGCATGACGAGAAGGTGGACCTATGGAGCCTGGGCGTGCTGTGCTACGAGTTCCTGGTAGGGACGCCCCCCTTCGAGACCAAGAGCCACGAGGAGACCTACCGCAAGATCTCCAGGGTGGAGTTCAGTTACCCGGAGTACGTCAGCGCAGGGAGCCGGGATCTGATTGGCCAGCTGCTGAAGCACAACCCGGCGCAGCGGCTCCCCCTGCAGGGTGTGCTGGCCCACCCCTGGTCGGCCAACCCAGCACCAGCGTTAGCCAGTGAAGCGGCAGTTGCTAAGACTGACCTTCCTGCCCCTGCCACCCACCAGAGCTCAAGACTACCTAGCTCTGAAGATGCCCCTGGCCAGGGCAGGGGGTGCGGCTCCTTTCTGATGGAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11481 AURKA; aurora kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007980 True 1530 mRNA 0.59 10 38921036 38925671

Neighbor

gene id symbol gene type direction distance location
AMCG00007978 prelid3b,LOC108231491 coding upstream 3060 38909285 ~ 38917976 (+)
AMCG00007981 NA coding upstream 16525 38900328 ~ 38904511 (+)
AMCG00007979 NA coding upstream 22145 38861527 ~ 38898891 (+)
AMCG00007969 npepl1,LOC107666140 coding upstream 136415 38768211 ~ 38784621 (+)
AMCG00007968 stx16 coding upstream 153452 38757856 ~ 38767584 (+)
AMCG00007986 NA coding downstream 78330 39004001 ~ 39012851 (+)
AMCG00007987 LOC107703109 coding downstream 125291 39050962 ~ 39052920 (+)
AMCG00007985 fam210b,LOC102797503 coding downstream 134976 39060647 ~ 39069306 (+)
AMCG00007991 NA coding downstream 178504 39104175 ~ 39112999 (+)
AMCG00007998 NA coding downstream 312377 39238048 ~ 39239628 (+)
G27670 NA non-coding upstream 12854 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 65269 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 86442 38792449 ~ 38834594 (+)
G27581 NA non-coding upstream 192004 38671871 ~ 38729032 (+)
G27561 NA non-coding upstream 438645 38481297 ~ 38482391 (+)
G27708 NA non-coding downstream 128868 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 133860 39059531 ~ 39059734 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 280710 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 340751 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 365297 39290968 ~ 39291221 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 212121 38692739 ~ 38708915 (+)
G27551 NA other upstream 484441 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 497881 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 750890 38168570 ~ 38170146 (+)
G27518 NA other upstream 774186 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 577408 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 584740 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 614549 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 891356 39817027 ~ 39834952 (+)
G27974 NA other downstream 1130961 40056632 ~ 40059386 (+)

Expression


Co-expression Network