Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00007981 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 38900328 ~ 38904511 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007017 | microtubule-based process | biological_process |
| GO:0051258 | protein polymerization | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00007981 | True | 297 | mRNA | 0.56 | 5 | 38900328 | 38904511 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00007979 | NA | coding | upstream | 1437 | 38861527 ~ 38898891 (+) |
| AMCG00007969 | npepl1,LOC107666140 | coding | upstream | 115707 | 38768211 ~ 38784621 (+) |
| AMCG00007968 | stx16 | coding | upstream | 132744 | 38757856 ~ 38767584 (+) |
| AMCG00007971 | NA | coding | upstream | 173562 | 38713761 ~ 38726766 (+) |
| AMCG00007964 | NA | coding | upstream | 238997 | 38636482 ~ 38661331 (+) |
| AMCG00007978 | prelid3b,LOC108231491 | coding | downstream | 4774 | 38909285 ~ 38917976 (+) |
| AMCG00007980 | NA | coding | downstream | 16525 | 38921036 ~ 38925671 (+) |
| AMCG00007986 | NA | coding | downstream | 99490 | 39004001 ~ 39012851 (+) |
| AMCG00007987 | LOC107703109 | coding | downstream | 146451 | 39050962 ~ 39052920 (+) |
| AMCG00007985 | fam210b,LOC102797503 | coding | downstream | 156136 | 39060647 ~ 39069306 (+) |
| G27667 | NA | non-coding | upstream | 44561 | 38855531 ~ 38855767 (+) |
| G27648 | NA | non-coding | upstream | 65734 | 38792449 ~ 38834594 (+) |
| G27581 | NA | non-coding | upstream | 171296 | 38671871 ~ 38729032 (+) |
| G27561 | NA | non-coding | upstream | 417937 | 38481297 ~ 38482391 (+) |
| G27553 | NA | non-coding | upstream | 458257 | 38441536 ~ 38442071 (+) |
| G27670 | NA | non-coding | downstream | 1543 | 38906054 ~ 38908182 (+) |
| G27708 | NA | non-coding | downstream | 150028 | 39054539 ~ 39055627 (+) |
| G27709 | NA | non-coding | downstream | 155020 | 39059531 ~ 39059734 (+) |
| G27760 | LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 | non-coding | downstream | 301870 | 39206381 ~ 39208293 (+) |
| G27781 | NA | non-coding | downstream | 361911 | 39266422 ~ 39266673 (+) |
| AMCG00007970 | rab22a,LOC107596793 | other | upstream | 191413 | 38692739 ~ 38708915 (+) |
| G27551 | NA | other | upstream | 463733 | 38432045 ~ 38436595 (+) |
| AMCG00007957 | raly | other | upstream | 477173 | 38355929 ~ 38423155 (+) |
| AMCG00007952 | romo1,LOC102788570 | other | upstream | 730182 | 38168570 ~ 38170146 (+) |
| G27518 | NA | other | upstream | 753478 | 38144984 ~ 38146850 (+) |
| G27847 | LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 | other | downstream | 598568 | 39503079 ~ 39504377 (+) |
| AMCG00008007 | ncoa5,LOC107666089,LOC107740257 | other | downstream | 605900 | 39510411 ~ 39592411 (+) |
| AMCG00008010 | NA | other | downstream | 635709 | 39540220 ~ 39545607 (+) |
| AMCG00008020 | NA | other | downstream | 912516 | 39817027 ~ 39834952 (+) |
| G27974 | NA | other | downstream | 1152121 | 40056632 ~ 40059386 (+) |
