AMCG00007982 (slc32a1,LOC108436412,LOC108272428)


Basic Information

Item Value
gene id AMCG00007982
gene name slc32a1,LOC108436412,LOC108272428
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38942835 ~ 38949522 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007982
CTTTCCTCCGTCTTACTTTTGTTGTCGTTGGCCTTTTTTTtccatcccccctcccccctcctcgTCTTCGGGTGCGAGAGCAGAGCTGCAGGTGCGAGCAGGATGCAGGGGCCAAGCACCGGAGTCTGAAGGTGACATGAGCCAGGGGATTACGACCAAGAACAGGCGCACTTTCAGCAAGAATTGGAGATAACAACTGAAGAGAACTCACTTTCGGGGATTCTTACAGTTTCGTCAGATGATTTTATTTGCTATCCAAAAAGAACAATCACTAATATTATAGAAAATAGAAATTCTACAACACCAACCGcacaatataatatttcaaatcaataataaacaacaacccTGTCTATATCTCTATTGATAATTAGCTATATACaaagattagattagatttacAACTGAGCAACGATGGCAACCTTAATCCGAAACAAGCTTTCGAACAAGCTCTCCAATGCAGCCACCACGGTCAGCAACAAATCCCAGGCCAAGGTGAGCGGCATGTTCGCCCGCATGGGCTTCCAGGCGGCCACAGACGAAGAGGCGCTAGGTTTTGCCGTTTGCGATGACTTGGATTATGACCACAGGCAAGGTCTGCAAATGGACATCCTAAAGACGGACGAGGTTGGCGGGGAGCCGGGCGGAGATACTGGGGTGGAAGGGGACAGCCACTACCAGAGGGACGGCACCGGTCCCCCGCCCTCATCGTCCAAAGACGACGGGGTTTGCGCCGAGCTGGAGGCCCAGGACAGGCCTAGAATTACCGCGTGGGAGGCGGGCTGGAATGTGACCAATGCCATACAgGGGATGTTCGTCCTTGGTTTACCCTACGCCATCCTCCACGGCGGATACCTCGGACTCTTTCTCATTATCTTCGCGGCGGTAGTCTGCTGCTACACCGGCAAAATCCTAATCGCTTGCCTGTACGAGGAGAACGAAGACGGCGAGCTGGTGCGCGTCAGGGACTCGTACGTGGACATCGCCAACGCCTGCTGCGCGCCCCGCTTCCCCTCGCTGGGCGGCCGTGTGGTGAATGTAGCCCAGATTATCGAGCTGGTGATGACGTGCATCCTGTACGTGGTGGTGAGCGGCAACCTCATGTACAATAGCTTCCCCTCGCTGCCCGTGTCCCAGAAGTCCTGGTCCATCATCGCCACTGCTGTCCTGCTGCCCTGCGCCTTCCTGAAGAACCTGAAAGCTGTGTCAAAGTTCAGCTTGCTCTGCACCCTGGCTCACTTTGTCATCAATGTCCTGGTCATCGCCTACTGCCTCTCCCGGGCACGCGACTGGGCCTGGGACAAGGTCAAGTTCTACATCGATGTCAAGAAGTTCCCCATTTCTATTGGCATCATCGTGTTCAGCTACACGTCGCAGATCTTCCTGCCCTCGCTGGAGGGCAACATGCAGAAGCCCAGCGAGTTCCACTGCATGATGAACTGGACCCACATCGCCGCCTGCATCCTCAAGGGGCTCTTCGCCCTAGTGGCTTACCTCACCTGGGCTGATGCCACCAAGGAGGTCATCACGGACAACCTGCCCTCCACCATCCGGGCGGTGGTGAACCTCTTCCTGGTGGCCAAGGCCTTGCTGTCATACCCTCTGCCCTTCTTCGCTGCGGTGGAGGTGCTGGAGAAGTCCCTGTTCCAGGACGGAGGCCGGGCCATCTTCCCTGACTGCTACGGTGGTGACGGCAGACTGAAGGCCTGGGGCCTGTCGCTGCGGTGCGGCCTGGTCGTGTTCACCTTGCTGATGGCCATCTATGTGCCGCACTTCGCCCTGCTCATGGGGCTGACGGGCAGCCTGACGGGGGCTGGGCTGTGCTTCCTGCTGCCCAGCCTGTTCCACCTGAAGCTGCTGTGGAGAAAGCTCCTGTGGCACCACGTGTTTTTCGATGTCGCCATCTTTGTTATTGGAGGTATATGCAGCATTTCCGGCTTCATTCACTCCATGGAGGGGCTCATAGAGgcttacaaatacaacattgaGGACTGAGGGAGTGGGGGAAGAGAACCGGATGCAAGCACACTTACACTCACATTCAAAGAGGTCGCTCCGtcacaagcacacacatgcacacacacacgcagatatgcacacagacagacagacattcatTCACCCACTCACTcatgaatataaaaacacacacacacacacacacacacacacaaccataaCCAAACACAAGATAAAATAGACAAcacataacaatacaaaacgaacaaacaaaaagcagaaacatttttttaaaacgaACATATCCATCTTTTTTTGTGGAGTATGGgtttacagaacaaaaaatcAGAACTCAACTAACACAGACTACACGTCATTCATACCCACTTGCTAACTGAAACTGTCAAACAAAATGGGTGTTCAACACATTTACAACTTCCccgtttatttatgtataattatgtttatgtttattagtATGATTATTAATAACGTAAAATCATATCACATATGGGTGATGTCGAGGCAGTGCACTGGGACGCAGCTCTGTTTCCAGATCGATAAAGCACAGTAACATTATGCAATCTGGAACTTAACGACTGCCCGGGATGCGCATAGTTGAATAATTGAATTTCTGCGTCACAGCTTTAGAACAAATTGCAGTGTTGCGTCAGGAGGAGTTCAGCCAGGACCTGGGCTAGTCGGCTACACGTGTTGCATATCGCAGTATTTTGTGTGCCAAGTGGGAACCATGGCAATAACCCCCCCCTTCCAGCCCCACACATACACTGATAAATATCTACTGGAGTGTACATAGCCGTCGATATAAGGACCAAATGGCAAAAACCTTACAAAACGGCCTTCTGGtttgtaaatacaataacaaaaagagagCAAGACAGAGACCATATTTTATCCAAAGCTACATATTGAGGCAAATTATTTATGCaaagctatatttatttattaaattctgCACAACGGTGTGGCAAAAAGGGGAAAGCTGAGATTAAGAAGCTATTccgtcttttgtttgtttgtttgttaaagtttttttttaattgcctacAATTAAAtgatacataaacaaacaaatcgaGCACTAGACAATGCAAGAATGACTATgctaaattataaattatatttaaaatatgctttaaaaaaacaagcgGTTACACGATATTGTTTCGCGCGTTGGGCcttctataaaacaaataaataataataataaaatgcgcGCACAAACACGCACACCAATTGCAAATGAAGATTCAAAACTTAAGAACAACgcttaagaaacaaacacattaaataattacatacacacatgcataaatgcctacatacatacataggtaGATAGTTAGATAGATAGTTAAAACGGTCTCTAGGTCGCTGGTTTTACTGTCATATCTACTGTGTAAAGACGCAAGAAGCGACAGGGCTCCTGATACAGATCCGCAGCTCCCACAGCGGCTCCGTACAGAGGGGGGCGTCGGATAGACATCATCAGATATAGAACATCCTTATTCCGCCAAAGCACAATTAATAAAGGACAGGGCCAACggaacacattaattaatataacagAAGGACGCATACAGAAAAACACCGCTATATGATCCcttctgcaaaaaaatattattctacACTCACGGACATCCGACTGCGAATAATGTCCTTAACTCAATTTGATTgccacttatttatttatgtacacacatttctgtattgattaatttattatttgttaattgaaaTGGTTGTAATTGttaatatctatttatttttatattttgggaTGGTCTCCAACGAGCCTCTGTTTTTGCagctcaaatgttttttgttctcaatttaaaagagggagagagagatatcaTTAAAAGACGtgaaagaagaggaaaaatacGAAGAATATGACAAAgtcaacaaataaaaatcaaaaacaagcataaagacatttttcattatgtGCAATCCAACGGGTCCTGTGGAGGTGTTATAAAACGTATGTGTGGTGTTATTGTGGTTTCAAAAAAGATGGAATGTATATCacaaaaaatatctttaaacaTATAtcgtggaaaaaaataatatattgaagaataaagaaataagtgAAACAGTA

Function

symbol description
slc32a1 Predicted to enable gamma-aminobutyric acid:proton symporter activity. Predicted to be involved in neurotransmitter loading into synaptic vesicle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite terminus; neuron projection terminus; and plasma membrane. Predicted to be integral component of synaptic vesicle membrane. Is expressed in dorsal habenular nucleus; inhibitory interneuron; and spinal cord. Orthologous to human SLC32A1 (solute carrier family 32 member 1).

NR:

description
PREDICTED: vesicular inhibitory amino acid transporter

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007982 True 4087 mRNA 0.46 2 38942835 38949522

Neighbor

gene id symbol gene type direction distance location
AMCG00007977 NA coding downstream 106698 38831105 ~ 38836137 (-)
AMCG00007976 NA coding downstream 125103 38794104 ~ 38817732 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding downstream 152050 38785536 ~ 38790785 (-)
AMCG00007972 NA coding downstream 199792 38733689 ~ 38743043 (-)
AMCG00007973 ppp4r1 coding downstream 250061 38679465 ~ 38692774 (-)
AMCG00007988 NA coding upstream 27393 38976915 ~ 38985485 (-)
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding upstream 121058 39070580 ~ 39078098 (-)
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding upstream 164189 39113711 ~ 39150259 (-)
AMCG00007994 NA coding upstream 222966 39172488 ~ 39204907 (-)
AMCG00007997 NA coding upstream 256785 39206307 ~ 39213355 (-)
G27686 NA non-coding downstream 20147 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 87058 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 163083 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 175267 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 230498 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 505518 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 814408 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 841024 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 892809 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1327641 40277163 ~ 40277647 (-)
AMCG00007983 NA other downstream 5172 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 35024 38904758 ~ 38907811 (-)
G27522 NA other downstream 778293 38161286 ~ 38164542 (-)
G27502 NA other downstream 850957 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1354310 37573034 ~ 37588525 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 83265 39032787 ~ 39049597 (-)
G27720 NA other upstream 104631 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 139035 39088557 ~ 39091895 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 550799 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1318750 40268272 ~ 40288574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033288 slc32a1 coding NC_007117.7 CM002890.2 60142619 ~ 60147517 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_18540426_18543271 SLC32A1.S, SLC32A1, VIAAT coding CI01000340 null 18540261 ~ 18544300 (-)