AMCG00007983


Basic Information

Item Value
gene id AMCG00007983
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38924581 ~ 38937663 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007983
AAGAAATTAAagatcagcaaacaaaaactacagTTTCACCGTCTGCTTCCCCACTGCCTGGATCTCACTTTCGCCGCTCCTGCTAGGTCACACGGGAACACAAGCGTCACCCACCTGGTTCCCAACCGCTGCACTGCAGAGAGCTCGTGATCTGAGCAGACAACTCCTCGAGATGTGGCAATCTCTGCTCATCCTCCTGACCACGACCCATCAAGCACTGGGAACCAACGCCGGCATAAAAGCCCTGCTGACCAGCAAGGGCCTGCAGTATGGGAAGCACATTGGCACCAACCTGCTGCAGCAGAAGCTGGGGAGCCTGTCCATTCCTGATGTGACTGGGCAGGTCGACATCTCCCCCCTGGGGGCTGTGGACTTCTCACTCAACAGcaTGAGAATTACGAAGTTCAACCTGCCCGAGCCGTCCGCAGAATTCACCGAGGGACAGGGCATCATGGCGGCCATGAGCGGCCTGAACGTCCAGGTGCACGGCAACTGGAACACGCACTACACTTTCATAAGGGACAGTGGCACCTTTGACGTGGCCCTCTATGGAATGCACGTGTCCTTGCTGCTGTCCCCAGGCACGGACGACACCGgacacctctccctctccagccaGCAGTGTGTCTCTGGCCTCAATGACGTAGACGTCCACTTCTACGGCGGGGCCAGCTTGTTCTTGGGCAGCATTAAAGGAAGAATCATGTCCGAAGTACAACAAAAGCTTTGTCCAATGGTGAATGACGCGGTGGGCGGATTTGACACCGTTCTTCAAAACATGAAAGTCTCTGTCCAGATAAACCCGAATATCCTGGTTGAGGTCCCGCTGCTCAGCACCCCCATAGTGGGAGACTCGGACATGGAACTGAGTCTGAAGGGGGAGTTCTACAGTGTGCGGACCCACGCCGAGCCCCCCTTCCCTGCCGGGCAATTCTCGCTGCCCCCGGACAGTAGCCGCATGCTGTCTCTCGGTGTGTCCGAGTTCTGCGTCAACTCCGCCGCCTTCGCCTACCTGTCGGCCGGCCTGCTGCAGGTGAACATCACCGACAACATGCTGCCCAAGCAGTTCCCAGACATGCTGATGCTGGTGCAGGCGTTCGCCAGCCAGCCACCCCGCGCCTCCTTCCTGCCCGACAATGTGATGGTGGACATGTCTGTGGCCGCCAAGTTTTTCGCCATCCAACCCGATGCCTCGCTGGCGCCACTCTTCACACTGGAGATGGAAGCCAGTTTCAAGGCCCACGTGTTTATATCGGAGGAGAAGCTGAAGGGGTCTTTTGACACTGAGTCTGACGTCCACCGAGGTGGGACCGTTCCAGccAATCTGACTGCCGGCATCCCGCTGCCCACAACCCCCTCAGTCAGCTTGGTCAATCCTGTGCTCAAGGTTAACCAGGGTTTCATGACCATTGCTACAGACACCAGCTACTCCCCGTGAGCTGCTGAAAGGGGAGACTGTTGAACTCTGGCGAGGGAGGCTCCTAACTGAACCCAGACAAGCAAAATGTCAAGACTAACATTAATCTTCATAACTAATTATTTCCATGATGGACCTGGCAGTGGGGAGAATAAGAGTATCCCggcttttactttttttttttttttttttttt
>TU34645
cagaccaaGTCACTGGAGAGCGTACTGAAGACAGGGATTCAGTTGCTCGTGCTGCCTAAAGTGAACGccAATCTGACTGCCGGCATCCCGCTGCCCACAACCCCCTCAGTCAGCTTGGTCAATCCTGTGCTCAAGGTTAACCAGGGTTTCATGACCATTGCTACAGACACCAGCTACTCCCCGTGAGCTGCTGAAAGGGGAGACTGTTGAACTCTGGCGAGGGAGGCTCCTAACTGAACCCAGACAAGCAAAATGTCAAGACTAACATTAATCTTCATAACTAATTATTTCCATGATGGACCTGGCAGTGGGGAGAATAAGAGTATCCCggcttttactttttttttttttttttttttttttttttaaatggaaaactaTTTTAAGCCTTAAGTTTGAAGCAGCCACCGAAAGATCAAGGACTGGCGTTAAAAAAACCCAACCTGTTCCTTTTCACAGAGACACACCAGTACTTATTTACAAGAGTAATTTGTACAGATTTATTACATCTTTAATACAGTTAGAACACAGGTTtgtcactttatttttaaaaagtccataatcattttaaaacgGCTAAATATTTACAAGAACAGGTGAATTATATAAATTTTCCCTGGAGTCAAGCCACCAGCCTCTGTGCAAGTCAACAAGCCTGTGGAGATCCAGGCAAGGTGTATAAATATTGAGGCGGAGAATGGGTCTCTTACACCACCAAAAGAAAAACGACAGACGAAGGGCAGAGCGAGCACCACACATGGCGGCGCTGTAgatcagagaaaataaaatacaatgaccTGGACTCACTGTCCAGGGCTGTTCAAGCCATTGGCTCTACAGGACGCCCCCCTCCCCTGACCGAATACTGACCAACTCCATCAGAAAGGAGCCGCACCCCCTGCCCTGGCCAGGGGCATCTTCAGAGCTAGGTAGTCTTGAGCTCTGGTGGGTGGCAGGGGCAGGAAGGTCAGTCTTAGCAACTGCCGCTTCACTGGCTAACGCTGGTGCTGGGTTGGCCGACTGTGGAGCACTTGGACTGCTCGATAACCCAGGGGTGGGCCAGCACACCCTGCAGGGGGAGCCGCTGCGCCGGGTTGTGCTTCAGCAGCTGGCCAATCAGATCCCGGCTCCCTGCGCTGACGTACTCCGGGTAACTGAACTCCACCTGCGGAGGAGGAAAACGTGGAAAGGCTGGTCAGAGGGAGCGTAATGGGAGGATACCTTTTCCACCCCCTGGTTCATCTTTCAGGGCTTTGCAGAGTTTAACACAAGGTTCTGCAGCATTGGTCCACAGCCAGAAGCCCATCCCAGGTGTGATAGCTCTGGGCCTCGAGGCCCCAGGGTTCCTTTCCACCCAAGCTTCAAATACAGAGTCAGAGTTAACTGCACCCCCCTTACCCTGGAGATCTTGCGGTAGGTCTCCTCGTGGCTCTTGGTCTCGAAGGGGGGCGTCCCTACCAGGAACTCGTAGCACAGCACGCCCAGGCTCCATAGGTCCACCTTCTCGTCATGCGTTCGCCCCTCAATCATCTCGGGTGGCAGGTAGTCCAGAGTGCCGCACAGCGTGGACCGCCTGCAGACACCAGCACACAGCTGCTCAGACGCCAGTGACCAAGGCAGCTGTCCGGACTACTACACCCCCAGCTCCCACTGCCCATCACTCTGGCTCTCCCAGATCAGGGCGAAACTGCTACTCTTTTTACTCATACAATATCGACCCATGGGTGTTTAGTAGAGCGGCCTTGGCAAGGCATCCAGAGTGctgtacagatttaaaaaatctggtggatttcaaaatatttcagcCCACTTCcaaaggttttttttccccccaccccaataaATGTTTCCCCTGTACACCCTTTACAGgatttcatttgtttccatgaagctgtaaaatgcaattaaacccCACAGACAACCGGTTTTCTAAATTCTAAttgcaataaatattttaaaccact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007983 False 1612 mRNA 0.56 14 38926185 38937663
TU34645 True 1964 lncRNA 0.50 3 38924581 38927571

Neighbor

gene id symbol gene type direction distance location
AMCG00007977 NA coding downstream 88444 38831105 ~ 38836137 (-)
AMCG00007976 NA coding downstream 106849 38794104 ~ 38817732 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding downstream 133796 38785536 ~ 38790785 (-)
AMCG00007972 NA coding downstream 181538 38733689 ~ 38743043 (-)
AMCG00007973 ppp4r1 coding downstream 231807 38679465 ~ 38692774 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding upstream 5172 38942835 ~ 38949522 (-)
AMCG00007988 NA coding upstream 39252 38976915 ~ 38985485 (-)
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding upstream 132917 39070580 ~ 39078098 (-)
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding upstream 176048 39113711 ~ 39150259 (-)
AMCG00007994 NA coding upstream 234825 39172488 ~ 39204907 (-)
G27686 NA non-coding downstream 1893 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 68804 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 144829 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 157013 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 212244 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 517377 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 826267 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 852883 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 904668 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1339500 40277163 ~ 40277647 (-)
AMCG00007984 NA other downstream 16770 38904758 ~ 38907811 (-)
G27522 NA other downstream 760039 38161286 ~ 38164542 (-)
G27502 NA other downstream 832703 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1336056 37573034 ~ 37588525 (-)
G27439 NA other downstream 1353093 37570957 ~ 37571488 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 95124 39032787 ~ 39049597 (-)
G27720 NA other upstream 116490 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 150894 39088557 ~ 39091895 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 562658 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1330609 40268272 ~ 40288574 (-)

Expression


Co-expression Network