AMCG00007985 (fam210b,LOC102797503)


Basic Information

Item Value
gene id AMCG00007985
gene name fam210b,LOC102797503
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39060647 ~ 39069306 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007985
GCGGCGGGCTGGGGCGCGAGCTGTGCGGGATCATTGCGTGTGGAAATCCGTGCAAAGCGGCAGCGCCGGCGTTGAGCGGGGAACGGCTCTGTGCACCGCGCACAACATAAGCAGGCGTTTATTCATTCGCCGTCGGCAACGCATTGCAAAGAGCAGACGGGCCGGACAGGGACAATGCTGCTGCACGCCGCGGCACGGGAAGCGAGCCTGCTCGCCAGAGGCTGGAAGTTCACTAGAGGTGTACAAGTTGCGGCCGGGGCAGGGCAGAGGAGTCCCACCTGGGCCCGGGGCGATACCTGCTCTGATCTGGTTTGGCTGGGGGAATCTGACCTCCACAACCTGCAGTCTGTGACCGGAGGCGCTGCGGGAGCAAGCCGGGGCAACGTGCTCCTAAAGCGCCCGACCTCAGTGGATCACAGCGGCTGGGGGGCTTGCAAAACCATGGACTGCGTGCCACACTGGGGGCAGAGTTGGTCTGCGACGGGGACAGTGGCCCCAGCCCCGGTGCGGTGGACTCGCAATACAACAAGTGGGCGATGGGGACACAGCCCGCACCCAGACAGCAGTCGGGCGGCTCtctggggggcagggggcagccTCCTGGCGGTCCACAGGCAGGGCGCGCTGGACCCGGTGCTGTTCTGGGCAGCGAGGCGTTTCTATCTGCTGTCTCCTGCGGGCAGGGGGCAAGCCAAGGCCGGAGCAGCGCCAGACGCCGGCGAGAAACCGCAGACAGGAGCCGACCACCTCGACCTGACTTCCAAATCCAGTGAGTCTGCAGGTGTGTCCTCGAGCCAGGGGACGAGCCAGGAGGTCAAGCCCAGCAAGGCCCAGCAGCTGAGGAAGGTGTTCAAGGAGTACGGAGCGGTGGGCGTCACGTTCCATGTGGGAATATCCCTCATGTCTTTGGGAATTTTCTACCTGGCCATCTCCAGTGGGGTGAACATGACAGCGCTGCTCTTCAAGCTGGGCTTCAGTGAGGCGGTGGTCCAGTCCAGGATGGCGGCCGGCACCAGCACCTTTGTCCTGGCCTACGCCGCCCACAAGCTCTTTGCCCCGGTGCGCATCAGCATCACGCTGGTGTGTGTGCCGCTCCTCGTCAGACACTTCCGCAAGACCGGCCTGTTCAAGCCCCCGGCCTCCAGCCCCTGAGGGACCGAGAGGACTCCTGACCACCCCCTCACCCCGCCCTCCCCCAGTTTTTCCTTCCTGCCTTCCGTCCTTGCTGAGCTGCTGAAGGGTCTCCTCTCGCCCCACCCCCCTCCACGGCATTACCAGCAGTGACGTGCTCTTGCTTGTTTCTTaaaaattattactttaaaaacattttattattttaaatgttgtgtcCCATCCGTCAGCAGACAGACTCGCACCTGAGACGAGCCCCTTCACCGGAGAGACGAGGCTGTGGACGCTCACTGCGGGGGTGTTTCTTGGTGTGTCTGCGGCCTCCTTGTGCCTGTGAAAGCCACCGCTCTCCTCCTTCCCCTGGCTATTTTTAGCCGGATTGTCCCTGCAGGTGTTTGAACACGGGCCCTCGAGGATTAGTGTCAGAGCAGcagggggagagatggaggggggaACTGAGAAACGTCTTTGTGTGCCGATCAACTGTGTGTCCACAGAGGAGCCTGAAGAGTCTATTTAATGCCAGACTGGGCAGAataaacttgaaaaaaaaaaagactgatttaGATGATTGtgcacaaaacaagaaaaaaaaccaTTGAGGATGATTCATGTTTACAATCAAATCTTTCCTTCTACACTTGAATGCAGAATGCTTGTGAAGGACTCGCATCGCAGGACGGAAGCAAGCCTGGCTGAGGCGCTGCACTAACTGGTTGTTAATGAAGCTCTGTGGGGAGACAGGGTGCGGCGGGGTGTGTGCATTAGCCTGTGGAAACCCAGTGACGCTCCCTGTCCCCTCGGCCAGTGTGTGAAGTCATTGctgtttatttcattgtgtGCGTTCACAGTGGGCCCCAACTCGAGTTGCTTTATAAGGTCAGGTTGTACACCAcacaaaataagttttaattgtgtttattattataataaggcCCAATGTCATTCAGGATAAAAGTTTCTGAGGAGGCTGCTGGGCAGTAAAGAGCTGCAGTGATGTTACTCCTGGCGGCGGGGCTCCTCACTGCTGTGCAGTGCGACCAGTCGAACTTTgataaagaaaccaaaaacacacaatgcactTCAGTACGAAACATATTCATGACTTAAAGGAATAACTTAAGCTTCTCTTTTGTTTCTTCccaggatttaaaatgaatgatgtgTATTTAAGAATaactttaaagctttaaatgtgtgtgtgttatgggtCCAGTGTGTAGAGCAGTTTGCAGTGGGAAAGGGATGCAGAAGAACTGGTTTGACCGgtaggagagaaaaacaaagacgtTTAGGACTCTGGCACTTGTGCACACCCCTCGCCCGCACCGCACTCGCCTGTGTGATTCTGTTTGAAAGCTATTCTGGGTATTTTCTGATTTAGAGCTGTTTGATTTATTAAATGAGGAACCTTGAATCCgtttttctgttgtgtgtttgtcgCGGTGTCGTTTGTGACAACAGATCTGCCATTATCAGTTCTGCTAGTGTGACTACtggagtgtgagtgagtgtgagtgagtgtgtaatCTAGTATCTCTGCAGGCATGTCtgtc

Function

symbol description
fam210b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210B (family with sequence similarity 210 member B).

NR:

description
PREDICTED: protein FAM210B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007985 True 2687 mRNA 0.55 3 39060647 39069306

Neighbor

gene id symbol gene type direction distance location
AMCG00007987 LOC107703109 coding upstream 7727 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 47796 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 134976 38921036 ~ 38925671 (+)
AMCG00007978 prelid3b,LOC108231491 coding upstream 142671 38909285 ~ 38917976 (+)
AMCG00007981 NA coding upstream 156136 38900328 ~ 38904511 (+)
AMCG00007991 NA coding downstream 34869 39104175 ~ 39112999 (+)
AMCG00007998 NA coding downstream 168742 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 307672 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 342384 39411690 ~ 39413775 (+)
AMCG00008005 NA coding downstream 376764 39446070 ~ 39455574 (+)
G27709 NA non-coding upstream 913 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 5020 39054539 ~ 39055627 (+)
G27670 NA non-coding upstream 152465 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 204880 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 226053 38792449 ~ 38834594 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 137075 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 197116 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 221662 39290968 ~ 39291221 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 535306 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 888681 39957987 ~ 40003700 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 351732 38692739 ~ 38708915 (+)
G27551 NA other upstream 624052 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 637492 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 890501 38168570 ~ 38170146 (+)
G27518 NA other upstream 913797 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 433773 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 441105 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 470914 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 747721 39817027 ~ 39834952 (+)
G27974 NA other downstream 987326 40056632 ~ 40059386 (+)

Expression


Co-expression Network