AMCG00007986


Basic Information

Item Value
gene id AMCG00007986
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39004001 ~ 39012851 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007986
CAGAGGCAGTGGGAGCAGCCGGAGTTATTTTGGAGGCGCACCACTGTAAACATGGCGGCGCCCATAACCGGGAAAGTGTTTTCATTCCAGGATTACCGCGCTGTCCCCGACCCGATTTTCGAAGTCAGTCCCGAGTGTTTACACCCGTCGCCGGTCCCAATCGTTATAGACAATGGGTCTTTCCAAACCCGGGCCGGCTGGGCCTGTGGCGGAGACCAGTTTTCGACGCCTCGGCTGCTCTTTAAATCCGTGGCGGCGCGGAGTCGAGGGGCGGCCCGCAGCGAGACTCAGATCGGCAACGACATCCCGAACCTGGAGCCGCTGCGGTGGCTGCTGAAGAGCCAGTTCGACCGCAACGTGGTGGTCAACTTCGAGATCCAGGAGCTGATGCTGGATTACACCTTCATGCACCTGGGCATCACCTCGGAGGGCAGCGTGGAGCACCCAGTTGTCCTGACGGAGGCGCCCTGCAACCCCCTGCACTGCAGACAGATGATGTCCGAGCTGCTGTTCGAGTGCTACAGGGTCCCGCGCGTCGCCTATGGGGTGGACAGTCTGTACAGCTTCTACTACAACAACACACAGCGCGCCCTCCAAGCGCCGCACACCGGCATCGTCATCTCCTCCGGGTACCACAGCTCCCACATCCTGCCGGTCATCGAGGGCAGGTTTGATGCCCAGAACTGCAAACGCATCAACGTGGGGGGCAGCCACGCCGCCTCGTACCTGCAGCGCCTCCTGCAGCTGAAAATAATAGatcTGGAGCAGTGGCGCTGCCCAGAGTACTATGAGCGCGAGGTGCACCGGCTGCAGCTGCCCTTCTCCCCAAAGCTGGTGGGCGGCTCAGCCAGCGCGGAGGAGCGGCAGGAGAGGCGCACACAGCAGCTGCGCCGCCTGCAGGAGCTCAACGCCCGGCGCCGGGAGGAGAAGCTGCAGCAGGATCAGGAGCGGCTGGACAGACTGCTGGCCGTGCAGgagctgctggaggaTGGCCTGCTGGATCAGTTCCACAAGGCCCTGGTGGAGCTCAACATGGACTCGGCCGAGGAGCTGCAGTCCTACATCAGCAAGCTGAGCGTGGCGGTGGAGCAGGGCCGGGTGCGCTCACTGCCCACAGAGGGGCCCGACAGCAAGCCTGAGggtgtGACGGAGCTGGAGGCCGAGCTCACTGAGGAGCACTCTGAGTCGGACAAGACTGTCAATACAGTGCCGCCTGCATTCAACCTGGCAGAGTACCACCAGCTGTTCGTGGGCACTGAGCGGCTGCGCGTCCCTGAGATCCTGTTCCAACCCTCGCTCATTGGAGAGGAACAGATGGGCCTGACGGAGGCACTGCAGTTCATCTTGGACAGGTACTCTCCGGAGCAGCAGGGGGCGCTGGCGCGGAACGTGTTCTTGACGGGGGGCAACATGCAGTACCCGAGGATGAGGGAGCGCATGGAGCGGGAGCTGCTGGGGATCCGGCCCTTCCAGTCACACTTCCAGGTGACCCTGGCGTCGCGGCCGGCGCTGGATGGCTGGTACGGGGCACGGGAGTGGGCGCTGCGCCACGTGGGGCAGGCGGAGGGCTGGATTACCCGGCAGGACTATGAGGAGAAGGGCGGGGAGTACCTGAGTGAGCACTGTGCCTCCAACCCCTTCATCAGCCACCGCATCGCCAAGCCGCCCCGTGCCTCCGAGCCCCCACCTGCACCAACCTCCTCCACCTCAACCCTCACCACGAcagcccctgcccctgcccctgcccctgcccccgcTCCAGCCTCTGCCCCTGCCCCAGCTCTGGCCATGGACCCAACCGCAGCTCCTGTCACAGTCACTGCTCAAGTCACAGCCACATCCCCGGCACAGATGTCCATCCTGGCCTGACAGATGTCCTGTCCAGCCATGGCAGCTGAGTGGGGGGTGGTTTTGCATTTCTTCATCAGAGGCCAACAGGACACCAGGAACCCCAGCTAATAGCACTGTCACAGCTAGATCAGGAGGCTctgaaatcacacacaaacacacacacccacatacaAAACCACACACGCAAACATAGCCACACAGTTTAATGCCGAGGAGAgggctgctgtgctgcaggcCCCCCACAGCCTGGCTTTCCTGGCATCGCAGGTTCGTCATGACTGTGTCTCCCTCTCCAGAAGGCCGTGGGGGTGATGCTCCTCCCTGCTGTACCCATCTGACAAGCCTCACTCTACAGACACATCTGGGGGGACGTGAGCCGCAGCCATGAACGCCGAGCGGGCGAGACCCGATACGTCCCCTGCTGTGGAGCGTCCCGACAGCCTGGCACTGTACACCGCGTGGGATTGAGGTGATCCTCTGTGGGGCAGGTTAAAGCCTTGTTCTCTAGTGGGGTTCCCAGGTTGCCCCCCCCACTCCTGCTCCCCCTCTGCCTCACTATCCCAGTTCCTTGTTCGAGCTGTCCCTCAATCTTCTTCATGAGACGCTAAACCCGATCACTGCACTGAGCGGCCCGGTGGGAGCTGGCAATGCCTAGTCTCACTGCCTAGTGCCAGCGAGTGGCCGTGGTTGAAGGCATCTGCTGAAAGACTTGCTCAAAAGTGCCTCAGTTTCttcatctttaatatttttttatatatatatatatttttttttttatagaccTCTAGTGTAAACgtgtattatttttctatacCCTTAAAAGATTcttggtaaaataaatgttaaagatGTACAAAGTCTCGAGGTTAGATGGAGCCCTGGCCCGGAGGCATGTTTGGTATTTGAGGAATCTGCGTGGAGACAGAGAGGTGGGTCACATGCCGGCGCAGTGCAGAGCTGGTACCGCAGACTGTTACCAACGCAACCCAGCGGGGGATGCCAAAGAAGCCCCCTTGTCCGACCTTGCAGAGAACAAAACATCatggaattgaaaacaaaaagaaaaatatggtGTGTCGatattttccttaatttaaacattcttgaactgtgtataaaaaaaaaaactgatt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11672 ACTR5, ARP5, INO80M; actin-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007986 True 2984 mRNA 0.59 10 39004001 39012851

Neighbor

gene id symbol gene type direction distance location
AMCG00007980 NA coding upstream 78330 38921036 ~ 38925671 (+)
AMCG00007978 prelid3b,LOC108231491 coding upstream 86025 38909285 ~ 38917976 (+)
AMCG00007981 NA coding upstream 99490 38900328 ~ 38904511 (+)
AMCG00007979 NA coding upstream 105110 38861527 ~ 38898891 (+)
AMCG00007969 npepl1,LOC107666140 coding upstream 219380 38768211 ~ 38784621 (+)
AMCG00007987 LOC107703109 coding downstream 38111 39050962 ~ 39052920 (+)
AMCG00007985 fam210b,LOC102797503 coding downstream 47796 39060647 ~ 39069306 (+)
AMCG00007991 NA coding downstream 91324 39104175 ~ 39112999 (+)
AMCG00007998 NA coding downstream 225197 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 364127 39376978 ~ 39378054 (+)
G27670 NA non-coding upstream 95819 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 148234 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 169407 38792449 ~ 38834594 (+)
G27581 NA non-coding upstream 274969 38671871 ~ 38729032 (+)
G27561 NA non-coding upstream 521610 38481297 ~ 38482391 (+)
G27708 NA non-coding downstream 41688 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 46680 39059531 ~ 39059734 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 193530 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 253571 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 278117 39290968 ~ 39291221 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 295086 38692739 ~ 38708915 (+)
G27551 NA other upstream 567406 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 580846 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 833855 38168570 ~ 38170146 (+)
G27518 NA other upstream 857151 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 490228 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 497560 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 527369 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 804176 39817027 ~ 39834952 (+)
G27974 NA other downstream 1043781 40056632 ~ 40059386 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036847 actr5 coding NC_007120.7 CM002893.2 331425 ~ 340294 (+)