AMCG00007987 (LOC107703109)


Basic Information

Item Value
gene id AMCG00007987
gene name LOC107703109
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39050962 ~ 39052920 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007987
ATGCCAGCAGCCAGGGTTCAGCTCCACATTGCGGCTGCGAACGGCTATGTGCAGGCAGCCGAGTTGCTGCTGGAGGGGGGCGCTCGGTTGGACCGCAGGGACACAGACGGCTGGCAGCCCCTCCACGCGGCAGCATGCTGGGGCCAGaTGCATGTGGCCGAGCTACTGGTCTCTCACGGTGCCAGCCTCATCGCCAAAACCCACATGGACGAGACGCCCATTGAACTGTGTGAGGATGAGGAGTTCAAGGCCATGCTGCGGGACCTGAAGCAGAAGCACGACATCATCATGAAGTCTCAGCTGAAGCAGAAGACCTCGCTGTGCAGACGCACCTCCAGTGCCGGCAGCCGCGGgaaGGTGGTACGAAGAGCCAGTCTGTCAGACAGGAACAATCTGTACCGCAAGGAGTACGAGACAGAGGCCATTGTGTGGCTGGGGGGTCAGAAGGAGgaggagcgagagagggagtcAGACCAGGAGAACACACAGCTGGTGAGCAGGGTCACACATGGGGTCAGGAACCACTCCCTGGCCAAGCCCCGCCCCCGGACATTGAAGGATGGGGTCTCCTGGAACAGCTCCGTCTCCACGGGAACGGCCACTCCCAGCCACCCCCCCTGCAACGGGGAGCCCCCGCAGCTGTGCGCCTCGGACGCGGAGGCACGACTTGCCACACCGGCCCCAGTTACCATGGCAACCTCCCAGCCGGGGGCCGAGCCCTGGACCGCGGGCCGCGAACGCTGCGCCCAGACACTGTCGGAGCTGAAGAGGCAGAGAGCAGCTGCCAAGCTGCTCAGCCACCCGCTGCTGAACGGGCACCTGGGCAACGGCTCTGCGGCAACCAGCCCCCCTGGAGACCCCGCGGACGGCCGCATGCCCCTGGTGTCGTCCAACGGCAGCGCGGTCTACTACACCCCTGCCAGCGGAGACCCCCCCCTCCTGAGGCTAAAGCAGCCGCTGGAGGAAGCTGAGGAGAAGAGCCAGGGATGCTGCACTATCTCATAG

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory inhibitor subunit 16B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007987 True 1005 mRNA 0.65 6 39050962 39052920

Neighbor

gene id symbol gene type direction distance location
AMCG00007986 NA coding upstream 38111 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 125291 38921036 ~ 38925671 (+)
AMCG00007978 prelid3b,LOC108231491 coding upstream 132986 38909285 ~ 38917976 (+)
AMCG00007981 NA coding upstream 146451 38900328 ~ 38904511 (+)
AMCG00007979 NA coding upstream 152071 38861527 ~ 38898891 (+)
AMCG00007985 fam210b,LOC102797503 coding downstream 7727 39060647 ~ 39069306 (+)
AMCG00007991 NA coding downstream 51255 39104175 ~ 39112999 (+)
AMCG00007998 NA coding downstream 185128 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 324058 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 358770 39411690 ~ 39413775 (+)
G27670 NA non-coding upstream 142780 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 195195 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 216368 38792449 ~ 38834594 (+)
G27581 NA non-coding upstream 321930 38671871 ~ 38729032 (+)
G27561 NA non-coding upstream 568571 38481297 ~ 38482391 (+)
G27708 NA non-coding downstream 1619 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 6611 39059531 ~ 39059734 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 153461 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 213502 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 238048 39290968 ~ 39291221 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 342047 38692739 ~ 38708915 (+)
G27551 NA other upstream 614367 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 627807 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 880816 38168570 ~ 38170146 (+)
G27518 NA other upstream 904112 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 450159 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 457491 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 487300 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 764107 39817027 ~ 39834952 (+)
G27974 NA other downstream 1003712 40056632 ~ 40059386 (+)

Expression


Co-expression Network