AMCG00007989 (map1lc3a,LOC101077757,LOC102789823,LOC107685654)


Basic Information

Item Value
gene id AMCG00007989
gene name map1lc3a,LOC101077757,LOC102789823,LOC107685654
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39070580 ~ 39078098 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007989
ATGGTGTCTCTCCtattcctcttcctcttcccagCCGAGCGCTGTAAGGAGGTGCAGCAGATCCGGGAGCAGCACCCCAACAAAATCCCGGTGATCATTGAGAGGTACAAGGGAGAGAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTCCCTGATCATGTCAACATGAGCGAGCTGGTCAAGATCATCAGGCGCCGGCTGCAGTTGAACCCCACACAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCGACAGCCATCGCCGAGACCTATGAGCAGGAGAAGGACGAGGACGGCTTCCTCTACATGGTGTACGCCTCGCAGGAGACCTTCGGGCGCTAGAGAGATGGGGAGGTGGGAGGATTGTCATctgtgcagagagagggagaccgAGAGAAGGGGTGCCGCAAAACGCTGGAGAACAGTcactccttcttctcctcctttctctctctctctctctctctctcatgcacgTAGGAATCTGTCCTAATCCCCTGCGTATTAAACTGCAAACACAGCAGCTGTGTCTCTTCCTGCACGTGTCCGCCGTGTGGTTTAAGGCTCTTGTGTGACTTACtcttgaagtttttttttgtggtcaTGTCCTCTGCCTTCCTCTTCTCCACCTCGCATCGCCCTGTCCTGGCTGTCCCATCCTTCTTCTCTCCTGTAGTAGTTGTGCTAAACTGTGCACCATTGCCAAAATATCCCTTGGCCTTCAACCACTCATCTGGTTGCTGGGGTCGGGCCTATGTGTTGAAGAGGAAGGACTCTGCTGCTTCCACCCACTGTGGTTCACACTTGGTTAGTCattctttttgtgtttcattactTATTAATTTCTGTCTCCTGATGTTCAGAAGCACAGTTGGCCAAGATGCTGTGTTTCTGCCCACTGCTCTTGCTCCAGCAGCAATTTATTCTTCCCGACAGCAGGAGTTCCCAGCTCTGTTCATGGGGCCTGCTGTGCTGCTGGGTTTTGTTGCACCTGagcttaattacttaattgaaaccttaattgaacttgtCCCCGTAACCTGGGCGCTCGGTCCAGCGGGAGAAGACAACAAACAGGGCAGTTAGAACACCCTTCTGATCGTCTTCCACTGAgtcatgtgtttaatttaatttttccccCACATTCAAGTAAATAAGTAACTTATTCTAGCAGGATGATctctatgtaaaaaaaaaatatatatacatatatataaatgggaAGTTTGAAAGATTCTTGCTTTGCAAACCCCCATATCAGTGTACCCCAAGGACTGGTGTGTCACCTCTGTGTGTTGTGatggtgggggggcaggagggGCCACTACTGTAAAACCTTAAGTGTTCTTCAGTTTCTGTGATACTGTAGCACCAGTCCCACCTCTCTGCCTCGGGCTCCATCGCAGTGGGATGTCTCgggagggaggggggtgctGGTCTGTGTTGCCTAGCATACTCTGTCCCGACGTCTCTCTTGTTCAAGTGCAATGGCCAGCTTTTACTGCAGGGGAGAGCAAGAGAAGTCCAGGGTGGGGGGAACTGTGGAAGTCTCATCCATTAGTGAACTGCTCTTTTACATAGGAATAGACAAGCTtttttgcactttaaaaaaaaaaaaagatataaaaaaaattaaaagacttAGGATCTAAgtactgttttaaatgtgtatataatataatggatTGTGTGTAACCAGGTCTCTTCTAGAACACTAtattctgtgtgtatgtgtgtgttgctggtGTGTGTAATGGAGCGAATGGGGTTGTGATGCAGTATATATCGCGCACGCAGTTTCGGCCTGTATGCTTGTTcatgtggttttgtttctttctttgtttcttaaaaatgtatatctttttaGATTTCTTTTCCATACCAAAATAAATCATCAATGAACTGaattgtgtctctctgtggggCTTAGGGAGGGGTGGTGTGGAAGCTCGTATTACTTGTATAAACGTG

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

NR:

description
PREDICTED: microtubule-associated proteins 1A/1B light chain 3A-like, partial

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007989 True 1989 mRNA 0.47 3 39070580 39078098

Neighbor

gene id symbol gene type direction distance location
AMCG00007988 NA coding downstream 85095 38976915 ~ 38985485 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding downstream 121058 38942835 ~ 38949522 (-)
AMCG00007977 NA coding downstream 234443 38831105 ~ 38836137 (-)
AMCG00007976 NA coding downstream 252848 38794104 ~ 38817732 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding downstream 279795 38785536 ~ 38790785 (-)
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding upstream 35613 39113711 ~ 39150259 (-)
AMCG00007994 NA coding upstream 94390 39172488 ~ 39204907 (-)
AMCG00007997 NA coding upstream 128209 39206307 ~ 39213355 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding upstream 142984 39221082 ~ 39236482 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding upstream 162349 39240447 ~ 39258230 (-)
G27686 NA non-coding downstream 147892 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 214803 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 290828 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 303012 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 358243 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 376942 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 685832 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 712448 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 764233 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1199065 40277163 ~ 40277647 (-)
G27720 NA other downstream 14901 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 20983 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 132917 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 162769 38904758 ~ 38907811 (-)
G27522 NA other downstream 906038 38161286 ~ 38164542 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 10459 39088557 ~ 39091895 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 422223 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1190174 40268272 ~ 40288574 (-)
G28202 NA other upstream 1938061 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 2121391 41199489 ~ 41201825 (-)

Expression


Co-expression Network