AMCG00007990 (ppp1r16b,LOC106566117,LOC107558141)


Basic Information

Item Value
gene id AMCG00007990
gene name ppp1r16b,LOC106566117,LOC107558141
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39032787 ~ 39049597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007990
ATGGTGAAGCTGCTGCTGAACCGGGGTGCCAATGTGAATGCCAAGGACAACGAGCTGTGGACCCCGCTGCACGCCGCCGCCACCTGCGGGCATACGCAGCTCGTCAAGATCCTCATTCACCATGGCGCTGACCTCCTGGCTGTGAACTCCGACGGGAACATGCCCTATGACCTCTGTGAGGACGACTCCACGCTGGAGGTCATCGAAACCGCCATGGCCAACCGGGGTGAGGGCCGGGCCGGGGGGGAGTGGGTGCGGGAGGGTGAGGGACTGCTGCAGGAGAATCAGGACCTGAACCAACCCGACTCTCAAGGTGCCACTCTGGTGAGATACGTCTGTGGGTCTGTCAGGATGTCGGCCAGTCTGTGGGTCTGGGTCCATGTGCACTGCGAGTGCCTGGGAAGTGCAGTGTGTCCAGgcagcgtgtgtgtgtctatggAGATCGATGAGAGCCCAGCACAGCCAGTGGACTCGAGGCGTTGTGCTGTGCCCAGAGATCATTTGCGGTACCTGCTGAAGAACAACGTGAGCCCGGACCTCTGCAATGAAGATGGCCTGACTGCGCTGCACCAGGACCGCTTTCTCTCCACACTGTCTGTGGAGAACTGGGCCAGTCCGCCTGCGGGCCGCAGCTGCCAGTGGCTTGGTCACACTGACTTTGCTTTTAGTAGCGCGTGCTGCTCTGCCGAGAGGAGTGTTCATCTGAAGGAGCAGATTTCAGAGCCTTCTGCTCACCTCAAACACGACATGAACTCCAGCACCCAGTCCTGCTGCTCACTGGGAGTCTGA
>TU34684
GCCTGTTAGTGCATTACAGGACCGAATGAACAGGAGTCAAATCTGAGGAATGTAGCTGAATCTTATCAGCATGATTCTGGAATGCCAGTGTAAACGCATCTTGAAACacaactctgtctctctctgtgtgtctctctctctctctgtgtgtgtcagtgcagtgttcaGTCCACTCAGCATTGGTGTGGGTTTTATTATTACCCcatgtctctctccctcactctgtcTCTTGCTCTGTGTCTGTTCCCTGCAGTGCTGCATTGACAACTACGAGGACATGGTGAAGCTGCTGCTGAACCGGGGTGCCAATGTGAATGCCAAGGACAACGAGCTGTGGACCCCGCTGCACGCCGCCGCCACCTGCGGGCATACGCAGCTCGTCAAGATCCTCATTCACCATGGCGCTGACCTCCTGGCTGTGAACTCCGACGGGAACATGCCCTATGACCTCTGTGAGGACGACTCCACGCTGGAGGTCATCGAAACCGCCATGGCCAACCGGGGCATCACCCAGGAGATGATCAATGAGACACGGGCAGCCCTGGAGCAGAGGATGATAGGAGACATCCAGGGACTGCTGCAGGAGAATCAGGACCTGAACCAACCCGACTCTCAAGGTGCCACTCTG

Function

symbol description
ppp1r16b Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in establishment of endothelial barrier; regulation of protein dephosphorylation; and regulation of sprouting angiogenesis. Predicted to be active in plasma membrane. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B).

NR:

description
PREDICTED: protein phosphatase 1 regulatory inhibitor subunit 16B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007990 True 789 mRNA 0.60 7 39032787 39049320
TU34684 False 628 TUCP 0.54 3 39047289 39049597

Neighbor

gene id symbol gene type direction distance location
AMCG00007988 NA coding downstream 47302 38976915 ~ 38985485 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding downstream 83265 38942835 ~ 38949522 (-)
AMCG00007977 NA coding downstream 196650 38831105 ~ 38836137 (-)
AMCG00007976 NA coding downstream 215055 38794104 ~ 38817732 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding downstream 242002 38785536 ~ 38790785 (-)
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding upstream 20983 39070580 ~ 39078098 (-)
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding upstream 64114 39113711 ~ 39150259 (-)
AMCG00007994 NA coding upstream 122891 39172488 ~ 39204907 (-)
AMCG00007997 NA coding upstream 156710 39206307 ~ 39213355 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding upstream 171485 39221082 ~ 39236482 (-)
G27686 NA non-coding downstream 110099 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 177010 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 253035 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 265219 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 320450 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 405443 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 714333 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 740949 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 792734 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1227566 40277163 ~ 40277647 (-)
AMCG00007983 NA other downstream 95124 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 124976 38904758 ~ 38907811 (-)
G27522 NA other downstream 868245 38161286 ~ 38164542 (-)
G27502 NA other downstream 940909 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1444262 37573034 ~ 37588525 (-)
G27720 NA other upstream 4556 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 38960 39088557 ~ 39091895 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 450724 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1218675 40268272 ~ 40288574 (-)
G28202 NA other upstream 1966562 41016159 ~ 41017248 (-)

Expression


Co-expression Network