AMCG00007991


Basic Information

Item Value
gene id AMCG00007991
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39104175 ~ 39112999 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007991
GGAGCCACAGTACAACCAGCAGAAACAAAGCACACGGATCTCTCCTCCACGCACAATTAACGTGATTGCCGCTACAGAGGTGGGGGGCTGTCTCTCATACCGCGTCGCACTCACGCCGCGCTGGTAAATACTAGGCGTGGAGGCGGGTTGTCGGTCGGACGGTGCCGTCGCAGCGCCTCACTTGCGTCCCGGCTGCCCTGAACTCCCAGTCCCAGTgaGCCAGGTGGCCCATGATAACCAGCGCCAGAGTGTTGTGGAGTGAACCATGGGGAGCACAGCTGACGGGAGGCCTGGGGGATAGCAGGTTTAATTTCCTCAAGACCTGAGGCACGTGCACTGGAACCCGATACGGACTTCAGAATGTGACTTGGCTGCTTACTGTACTTTTTATTCTACTTTTGTACTTTTGAAACGTGAAAAAACAGCAGACCACTGTGGTGTGATGGAATGCAGCTACGCAGGACGTAGTAGCACCACAGCCCAGGTCtcttttaatattgtatatatattgtttttataattttctgtGCCACTCAGGGTAATGATAATCacttgctgtttatttattaatctacgAGAGACAAAAGGAAACACCTCAGACAAACTTGAAACTCATCTGTTAATTTTCCTCGCTGGTCGGGGACAGCGACCGAGTGGGGCATCTCCTGgaatctagaaaaaaaaaaaaaaaacacccaaaactCTGTGGGGATTCTCCAGGGGTTCTTCTCTGTTACTGCTGAGCAATCCAGGCCAGAGTAGACAGGGCTGTCTGCTGACCCTGAGCAGGAAACCatgcagtggaaaaacaaaatcttcctGTTTGTTGTCCTGTGCGGAGGCCTGATATTCACGCTGGTTGCTCACAGCATGCAGAAAGACAGAGCAGTTTTTCCAAGGCTGGTGGAGGCAGACACACAGGCCCCCACATCGAAGACTGGCGCCACGTGCGGCTGTGCCACCTGTGTGACAGACCCGGGGTGGTCAGGGTGGTTCAACCAGCGTTTCGACAGCCAGCAGCAGCTCTACCTCAGAGATGGAAGGATCCCCCCCGATATCCTGCAGTGGTGGCTGGCTTTGCAGTTTACTAAGGATGAGGTGGACATGGACGACATCATAAGGAAGTTGTTCAAGGTCATCTCCACTCCTCTATCCAGCAACGGCCTCCAGCCCCCCCACTGGACTCAGTGCCGTAGATGCGCCGTAGTCGGAAACTCTGCGAACCTGCAGGCGTCCCAGTATGGTCAGCTGATTGACTCCCATGATTTCGTGATACGGATGAATACTGCTGAGACACGTGGGTACGAGAGGGACGTGGGGGGCAAGACGACGCACCACTTCATGTACCCCGAAAGCGCGGTGGACCTGAAGGCCGGAGTGCACCTGGTCCTGCTGCCCTTCAAACCGCTGGACCTGCAGTGGCTGGCCAGTGCGCTGTCTACAGGCAACATCAAAAGAACCTACATGAGAGTCAAAGACCGGATATGGGCAGACAAGGACAAGGTGTTTGTGCTGAACCCAGCCTTCTTTAAGTACGTGCACATCAACTGGACGCAGTACCATGGCAGATACCCGTCCACGGGCATGCTGGCCATCATTTTTGCCCTGCACACCTGTGACCAGGTGTCTGTGTTTGGCTATGGCGCCGATCCGAATGGCAACTGGAACCACTACTGGGAATACAACAGATTCGCCGGGGCCTTCCGGAAAACTGGAGTCCACAATGCGGACTTTGAGACGGCCCTCATTAAGAGGCTGGACGAGGAGGGCATTATTAAGCTCCACAGCAGCAGAGCAGGCATGCAGCACACAAACCGGACAACGAGCGAGAAAGCAAACCCCGCCAAGGTATTTTTGGGATGAATTGTAGCATTGCCTCCGTCAAACCACACTGTCACAGACATGGTGACCCCGGCCGGCCCGCACTGGATTCGTCAACCACAAGTGAAGTTAAAGGACTGATCTATTCCAGACAGGATAGTGGGACGGTCCCCAAAGTGAAGGAAATTGGAAATGCAGAAGAAGAATGGTCATGCCAGACACATACACTAGTGGATTTTGCTGAGGCAGCTGTTTTCACatgatctttttaaaaataaaatatataattattacgGTTGTTGTTATTGATTCACATTTATTACTCTGCGTGTTGCACCAGCAAGCCTTACCCAGAATGAAACTTCAGGAATTGGAGCCGAGAGCAGGTGGGAGGCAAATGCAATAGAGTGAACTAGGACCCCTGTGTGGATgtggattaaaaagaaaaaaacttgtaTCTGGTCGATTTCCTGTGAAATTGCTGCTGTGGTCTTTGTATCAGAATAAATATGGTACTTTTCCACTGATGAAGAATAATA

Function

GO: NA

KEGG:

id description
K00786 GALT29A; beta-1,6-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007991 True 2360 mRNA 0.51 7 39104175 39112999

Neighbor

gene id symbol gene type direction distance location
AMCG00007985 fam210b,LOC102797503 coding upstream 34869 39060647 ~ 39069306 (+)
AMCG00007987 LOC107703109 coding upstream 51255 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 91324 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 178504 38921036 ~ 38925671 (+)
AMCG00007978 prelid3b,LOC108231491 coding upstream 186199 38909285 ~ 38917976 (+)
AMCG00007998 NA coding downstream 125049 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 263979 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 298691 39411690 ~ 39413775 (+)
AMCG00008005 NA coding downstream 333071 39446070 ~ 39455574 (+)
AMCG00008003 NA coding downstream 343664 39456663 ~ 39463302 (+)
G27709 NA non-coding upstream 44441 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 48548 39054539 ~ 39055627 (+)
G27670 NA non-coding upstream 195993 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 248408 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 269581 38792449 ~ 38834594 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 93382 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 153423 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 177969 39290968 ~ 39291221 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 491613 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 844988 39957987 ~ 40003700 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 395260 38692739 ~ 38708915 (+)
G27551 NA other upstream 667580 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 681020 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 934029 38168570 ~ 38170146 (+)
G27518 NA other upstream 957325 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 390080 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 397412 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 427221 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 704028 39817027 ~ 39834952 (+)
G27974 NA other downstream 943633 40056632 ~ 40059386 (+)

Expression


Co-expression Network