AMCG00007992 (LOC108424671,LOC107566077,LOC107691346)


Basic Information

Item Value
gene id AMCG00007992
gene name LOC108424671,LOC107566077,LOC107691346
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39113711 ~ 39150259 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007992
ATGACTCGGCACTCTACAGCTATGGAGCTTCAGCCCGGGgcACTGGACTTGGACCGGACGGTTCTACAGAAGATGAAGAAAGCAGCCAAAGCCAACCACGCCTCAGGACAAGACCACATCTCACATCTGGAGTCATACATCAATTCTATGGAGAAGCTGGCTGTGAATTTCAAAAACAACGGAGAACAGGATGTGGCATCGGCATTCAACAAGTTTGCAGAGTATTCCAAAGAGCTGCTCACACCAATGAAGAATGTGTTGCAGAGCATGTACCACAACATCAACTTCTTCCTGGACTCGCTGGTCAAGGGTGACCTGAAGGAGGTTAAAGGGGATTTGAAAAAGCCCTTTGACAGAGCCTGGAAggattatgaaaataaattCACCAAGATCGAGAAGGAGAAGCGGGAGCTGGCCAAGCAGTACGGCATGGTGCGCACGGAGGTGAGCGGCGGTGAGATCGCcgaggagctggagaaggagcGCCGCATGTTTCAGCTGCAGATGTGTGAGTACCTAATCAAAGTGAATGAAATCAAGACAAAGAAAGGAGTCGACCTGCTGCAGAACCTCATAAAGCACTATCTCTCCCAGTGCAATTTCTTTCAGGAGTGTCTTGCAGCCACAGAGAAGCTGAAGCAGTATATAGAGGCCCTGATTGCTGAGCTGACGACTATTAAACACAGGCAGGACGAGGAGAAGAGGCAGTTGTGCACCCTGAGGGAGCAGCTGAGGTCGGCACTGCAACCCGAGCAGAAGGAGGACTCCCTGAGCAGACAGACAGTGTACAGCATGCACCAGCTGCAGGGGAACAAGCAGTACGGCACAGAGAAATCGGGTTACCTCTACAAGAAGAGCGATGGGCTGCGGAAGGTTTGGCAGAAGAGGAAGTGTGCCGTCCAGAACTGCTACTTGACGATCGCTCATGGAACACCTAACAGGCTCCCGGCAAAACTCAACCTGCTCACCTGCCAGGTGAAGCCCAGTCAGGAGGACAAGAAATGCTTCGACCTCATCTCCCataACCGCACGTATCACTTTCTAGCCGATGATGAACCCGAATGTGTTGcGTGGATCTCGGTGCTGACCAACAGCAAGCAGGAGGCTCTGAACGTGGCCCTGGACGAGACCAAGCCCAGCGGGGAGAGCAGCGTGGAGGACCTGACCAAGGCCATTATCGAGGACGTGCGCCGCATGCCCGGGAACAGCACCTGCTGTGACTGTGGGGCGCCAGACCCCACCTGGCTCTCCACCAATCTGGGAATCCTGACATGCATCGAATGCTCCGGGATCCACCGGGAGATGGGGGTGCACCACTCTCGGATACAGTCCCTCTCCCTGGACAAGCTGGGCACCTCTGAGCTCCTGCTGGCCAAGAACGTTGGGAATTCTGGCTTTAATGAAATCGTGGAAGCCAACCTCCTCAGTCCCTCCCAGAAGCCCACGGCAGAGAGTGACATGGCGGTGCGGAAGGACTTCATCGTGTCAAAGTACGTGGAGCGCCAGTTCTCACGGCGGAGCGGCAGCTCCCCAGAGGCCCTGCGGCGCAGCCTGCAAGGGGCAGTGAGGAGCCGGGAAGTCTTCGCTCTGCTGCAGCTGTACGCGGAGAGGGTGGACCTCAGCCAACCGCTGCCCAGCCCTGCACAGGAGCAAGGGGAGGCAGCCCTTCACCTGGCCGTGCTATTGGCTGATCGAACCTCATTGCACATGGTGGACTTCCTGGTGCATAACTGTTCCAATCTGGACAAGCAGACCGTCCGGGGAAACACTGCCGTGCACTACTGCTGTCTGCACAACAAAACAGAGTGCCTTAAACTGCTGCTGAGAGCCAAGGCCAACACACATCTCAAAAACGAGGTGGGAGAGACTGGCTTAGACATCGCTCACAGACTGAGACACACTCACTGTGAGGAGCTGATCCAGCAGGCCCAGAACAACCAGTTCAACATGCACCTGCACGTGGAGTACGAGTGGAGGCTGCGGCAGGAGGACCTGTACGAGAGTGACGACGACCTTGACGAGAAGCTGGGCCCTGTGAAGAAGGAGCGCTCCAGCCGGCCGTTCAGTCTGTACCAGACCCCCAGCTCGGACCGTGCGGACCGGGGGGCCTATGCCGCGGTGGGCCGCCGCCTGGCCGGTCTAGTGCGGGACACCCGCCGCGAGATTTACGCCCTGCCCAACTCCCACACCCGCAGCCTGGACAGCCCCCCGCCTCCCCCGCCACCCTCTTCGCCCGCCCCGCCCCTTCCTCCCCGGCTACGAGCTCCAAACAtgcccccacctcctcctccggTCAGCCCACCCGACGCTCGGTGCGATGGTATGTCCAGCAAGAAGAGGACCCCTCCTCCACCTCTGGTCATCCGGCACAAGCGCACTCTTTCCGAGCCGTCCCCCCAGGTTCCCCACAGCCCCCACACCCCGCGCCACATCTCCCTCGATTATGGGATGCCTGTCAACTCCAGAGGCTTCGGCGGTCCTGAAAGCTCATTCCAGAAATCTGGCTCAGGGTCCCCAAAGTACACTGTGTCTACTCTCAACTGCCTGCCCGAGGTGCCTGAGAAAGGGATCCACTGTAGGGCCGATGCCGAGGGCCACTCGTCTCAGTGGATCTACCAGACTCCCCAGCCCAGCAGTCGCGGCCCCCCTCCCAGCTCCCCCCCCTACCGCGGCTCTGGCCCTGAGCCCAACGGAGCCTCGCATGtttccaccccccaccccctgcccagGAGTGCTCTGATGAAGCCCCGGGTGCGGAGGGCGAAAGCCATCTACGACTGTGTGGCCGACCATCACGACGAGCTGACCTTCAATGAGGGGGAGGTGCTGGTGGTGCTGGAGGAGGAAGATGCCGATTGGTGGATGGGCTACGTGGAGGGGCATCCTTACAAGAAGGGCCTGTTCCCCGCCTCGTTCGTCCAAATCCTGTCTGAATAAACGCTGGCAGAAGACCTGGCCCCGCAGCATGACCTGTGACCTGTGATCCACGTCAGCAGCACGGAAAAACTCTGCTCCTCCCATTTGACATGAAACTTGACACGTGCCCTCTACTCTTTTGTGCTCAGGCACGGAAACCATAACTACACaaaacgttttgtttttttttatgagggGGGGGCAGGTTCAGACTTCTAACAttaaagagaaaaggagagtTCAAATCAAAGGTACCGTGGGAAACCTCACAACTGGATGAATGCAGTagttctgctgtgtgtgtggggggtttcCGCATGTGCCCAGAACATGGCAAAACAGTGGCCGGTGTCTCTCACCCTGCTCCGAGTGATGCATGATTTGGTGTGAGATGGCGTGTTCTACCTTCAGTTCTCTGAGCGAATCCTGTCTGTCCATGACGGATTACCACACCTCTCAAAAACCAGAAAAGGAATCGACGCAACCCGACAAAGACCAGAGACTGGGTGCTGGTCGTGCCGTTGGCGTCTGCAGGAAGTGTGACTAATATGAGGCATCATCATGTCTCGGATCAGTTTGTTTGATTGTCGCATTGTTTAGCTTTAGTCTCGTTTTAGTCTGTTTTTGGGCAGTGGGGGTTGGAGGGTAGTCACGGCCAGAACAGAGTGTTTCTAAGAAATtcctttaaataagaaaaaaaataatcatccaTTTTAGAGCGAGCACAACAGTAAGATGCGTGAATGAATAGAGACAGGCCATATCAGGTGACGATATGACGAAGGATCTTGTTACTCAGGTGGGAATCTCCTGACGGTTTAAATATCAGGGTCAATACAGCTGTGCAATATCTTGTTGGCTGTTTATTGGTGTGAGTGTGTACAGTGCGTGTGGATGTGGTGTGAATACAGTTCAGTGTGAGTGCTTTTTAGTAAGATTTTCAGTCCACACTAGGCCTGAGGAACCAGTACCGTTGGCATTGTAGCACAGTCAGCTATTCTAGACCCATCTCTCCCCCTGTGAGTGGCTGAGCCCTCTCTGACAGCACACGCAGGAATTagtgatgaaataaaaataaataaattgcacacCGAAAAGCACAAATAATCCAAAAAGAGCAAAACCAATATACAGaactgtcagtcagtctgtcagtgttcAGTCCTTTTCTCCTTCCCAGAACAAGAACCTCTAGACAATCACACTGGTCTCAGGCCCTGGAGAGttgtagcattttttttatttaagatgcATATAGAAAATATTGGATTAACTgggttatttttcttgttgtttttacatttgtttgtttaattgcttccccagtGTTTTCggcatgtttctgtgtgtgtgtgtgtgtgtgtggcagaaTGATCTACAGTATTTTTGAGGCAGTATTGGTCTTCACTGGGTGTAAAAACACAGGCTGGTTTAATCTAAATACTTGAAACTTTTCACAGATACTGTACGGCATCCCTTCACGATGTCTCGCGCATAAATTATCTGCTTTCCAATATCCCATCTACCTTCTCCACGTACAAACCGTacgtttatttttgtaacttgtAAACTACTCACATTAGGTAGCAGctgtcctgtctgtgtgtggtaATTGCTGTAACATGTACATGGAGTATTACAATAATAGACATCACTATTGAGGTTTTGCCATCACTATTTTCTTTACCTGAAAGCAAGAGACAGGAGTTGTATAAAagttcatttcagtttgaaataatTTGGCATTGCAGCAAGTTTTTCTCACCTTGCCTTAATTACTTTCTGTATGTACCTATATTGTTTGTCTGTCTTGTTTATGGTacctgatattttattttgagagaaaaaaaaacagcaaagtaTTATA

Function

NR:

description
PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X3

GO: NA

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007992 True 4783 mRNA 0.52 29 39113711 39150259

Neighbor

gene id symbol gene type direction distance location
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding downstream 35613 39070580 ~ 39078098 (-)
AMCG00007988 NA coding downstream 128226 38976915 ~ 38985485 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding downstream 164189 38942835 ~ 38949522 (-)
AMCG00007977 NA coding downstream 277574 38831105 ~ 38836137 (-)
AMCG00007976 NA coding downstream 295979 38794104 ~ 38817732 (-)
AMCG00007994 NA coding upstream 22229 39172488 ~ 39204907 (-)
AMCG00007997 NA coding upstream 56048 39206307 ~ 39213355 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding upstream 70823 39221082 ~ 39236482 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding upstream 90188 39240447 ~ 39258230 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding upstream 119708 39269967 ~ 39289998 (-)
G27686 NA non-coding downstream 191023 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 257934 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 333959 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 346143 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 401374 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 304781 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 613671 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 640287 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 692072 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1126904 40277163 ~ 40277647 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 21816 39088557 ~ 39091895 (-)
G27720 NA other downstream 58032 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 64114 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 176048 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 205900 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 350062 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1118013 40268272 ~ 40288574 (-)
G28202 NA other upstream 1865900 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 2049230 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 2255532 41405791 ~ 41412224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03704267_03746574 UNM_SA1614 coding CI01000306 null 3704267 ~ 3746921 (+)