AMCG00007994


Basic Information

Item Value
gene id AMCG00007994
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39172488 ~ 39204907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007994
ATGTCCATCACTGTCAATCTGAAGAGGATCACCAACTTGCCAGGCAGATATGACCGGAAAGTGGAGTTATCCTTCAGAGGCTTCACCCACAAGACCAAGATCCTGCAGTGTGAAAATGAAGCTGTGTTCAATGAGCACTTCCGCTGGCCACACTATGGGAAGGTCATCCGAGACGAGATGCTGTCTGTCAGCGTCTACAACAGCAGCAAGGTGTTCAGTAACAGGCTGGTGGGGAAGCTGGTGATCAGCCTGCAGCATGTGGTGTCCGCAGGGAGAGTGATGCTGAGGGAGCCGCTGACCGACAAGAACTACAGCCTGACTGACATATATATCGAGCTGGATGTGCGGTACGAGCCTGTGGAGGGCACGGCGGGCGGCTGGCAAAGCGAAGAGTTCCTGAACTATGAGGATCCTGATGAcTCTGCACTTGTCATCAGAAATGCTGGCTTTTCTGAACCAGGATCCAAGCAGGCGCTGCGTCCGGAGCGGCTGGACCGGGAGACGCGGAAACTGGGCCGTAGCCTGGTGAAGGATGGAGAAGAGGAGGGGCATGACGGCGATGATGACGACGATGATGACGACTATGACGTGGCGGACATTGAGTGCGCCAACATGACCTTCACCCCCATCCTGAGCCGCTGCAGGTTCCTCTCGAAGCACGAGCTCGCAGCCACGCCCAAACTGCAGAGCTTCCAGGTAAATGTCAACGTGATTGAGGCTCAGAAACTTGTGGGTGTGAACATCAACCCGGCCGTGTATGTGACAGTGGGGGAGGAGAAGAAACACACGGTCACCCAGAAGTCCACCAACTGCCCCTTCTTCAATGAGAACTTCCTGTTTGAGTTCCAGGAAAACCAGGAAGTTCTCTTTGACAAAGTAATCGAGATTTCGGTGGTTCATAAGAAGACACTGGCGTTCATGATGACAAGAATAGGCACGTTCAAGATTGACATCAGTACAGTCTACAACCAGCCAGACCACCGATTCTACCAGAAATGGGCGCCACTCACAGACCCCAAGGACACGCGCACAGGGATCAAAGGTTACGTGAAGTGCACGATGAGTGTGGTTGCCAAGGGCGACGCCATTGGCATGCCCAGCATCCCCCCCGCGGGCAGCCAAAACGACGACATTGAGAAGAACCTGCTCCTGCCCAAGAGGATGCCAGTGGAGAGACCCTGGGCCAAGTTCCTAGTGAAGATTTTCAAGGCTGAGGGGTTACCCAGCATGAACTCTGGTTTCATGGGCAGTTTTTCCAAGATGATGGGCGAAAAGAAGGTCTTCATCGACCCCTATGTCCAGGTCACCTTTGCAGGACAGCAGGGGGAGACGTCAGTGGAGACGGACACCAACGCCCCCGAGTGGAACGAGCAGATCTCCTTCATCGAGCAGTTCCCCCCGCTGGCGCGCAGGATCAAAGTCCAGGTCCTCGACGATGCCAACATTGGTGATGTTGCCCTGGCAACACACTTCCTGGACCTGCAGCAGATCTCCGACCCCACCAGGAATGGGTTCCACCCTACATTCGGGCCGTCCTGGATCAACCTGTATGGCTCCCCGCAGAATTCAGTGCTGCGGGACGTGCACCGCGACCTGAATGAGGGGCTGGGCCAGGGCATCTTCTACCGCGGGCGCATGCTGCTGTCGCTGTCCGTGGAGGTGTACTCCTCTCCTACTGCTGTCGTCGAAAACAAGGCCCTCGCCGCCGTCAGGAACACCTTCAGCAAACTCACCCTGAAGAAGAAGAGCAAGAAGTccaaggagaagaagaaaaaggacaaggaaggtaggaggaggagcagcatCTCGGGAGCAGAGCCGGAGGACCGGGACTCGGAGGTGCCGGGCGCGGTCACAGTGGAGGTGGAGGAGATACATCCCCTTCCTGAGAACTTCTTGGGGGAGAAGGAGGAGTTCCTCTTGTTTGCCTCACTCTTCGATGTGACCATGATCGATCCCTCCATTGGCACCAAGCCAGTCTCCTTCGAACTCTCTATCGGTAACTACGGCAAAGCGGCCGAGGTGGTGGTAAAGTCCAAGAAGCGGGAGGCACggggggtggggcagggggAGGACAGGCAGCCGCTGATGGAAGGATCGGAGGatgagctggagagagaggagctggCTAACCCCCCTGGCAGCAGAGACCGgtCGTTCAGTTGTATCCCTCTGCTGTATGAGAAACCCTGTATCTACGTGTGGAACTACTGGGAGGACCACTGCTTCCGGCTGCACATGTCCAACTGGCTCTCCAAAATGGCCGACAGGCTGGAGCATGGCATCGACGAGGTAGAGAAGCTGCTGAAGAGGCCAAAGAGCCAGGCAAAGGAGCGGCTGGTGGAGGTGCTACTGGAGCTGGTGGCGAGCTGCAAGCAGTACAGCTCCCAGGCAGACAAGAAGACCGTGACACGCCCCAACAACCTGGACCGGAGTCGCCTGGACTTCCTGAAGAAGAACGTTGTCCTTCTGGCGAAACAGGCCCTGCGTGTGCGGAGGCGGATCACGGTGCGGACAGTAAGGGAGAAGCTGGGCGACGTCAAGAAGATCCTGCGAAGGGTCCGGTTCCTGGCCAAGGAGgaggagaagggcaAAGACTGCGGGAAGGTGCACACTGTCTACATGAAGGTGTGTCCGTccaacacagtgcagtgtgtcaggGCGTCTGTCTTTTGCTTCACTCTACTTAGGGTGTCAAAGGTTAAAGGCAGCGTGCTGTGTCCTGTGTCTGCTTTCAATAGTGTGTGTGGCATGTTggtcagtcagtcggtcagtcgGTCAGCCTGCCGTGTCTCTGTCCCCTCTCTGCAGACCCCTGGGGGGCCGGTGGGGGAGATCTTTGCCAAGCTGGAGGTGTACATGTGGCTGGGGGTGACCAAATATGTGAAGAACAGCCTCAGCAGTCTCCCCGCAGAGTTCACACCGCTGTACGACAACACCCCGCCCACCGTGCCGCCCCCCTCCAACACCCCCCCCATCAGGCTGTGCTGTGACGgtgttggaGGAGACTCTGTCACCCACCTGGAGTCAACTGCTGCTATCCTGATCGAGGGCAGCAAGGACGAACTGAAGGCCGACCCCCCAGTCATCGTTATCAACATCTACGACTATGACAAGTTTGGCAGCCCAGAGTTCATCGGCCGAGCGTTTGCGGAGCCAGAGATGAAGTTCGCTGAGGAGCCGTACAAAAAGCCCGCGCTCCAGTTCTTCGACATCAGCAAAGGCAAGGCAGCCGCTGGGGAGCTGCTGGCCGCCTTCGAGCTCATTGAGCTGGACTACTCCGGCTTCGGGGAGccctccctccctcaggaTGTGGACCCGAGGGATCCCGTGTATTTGCCTGAGGAGAAATTCTACATCATCCCTGAGGGCGTGAGGCCTGTTCTTAAGAAGTTCAGGATTGAGGTGCTGTACTGGGGCCTGCGGGACCTGAAGCGGGTGAACCTGTTCGAGGTGGAGCGGCCGCAGGTCCGCATGGAGTGCTCGGGGCAGCGCATCGAGTCCGAGGAGATCCAGAGCTACAAACTTAACCCCAACTTCAGCCAGATCATAAAGCACTTCGACGTGGAGCTTCCAGAGCTGGTGTACCTGCACCCCCCCCTCACCATCTTCGTGTTCGAGCGGCGGGCGTTTGGACGTCTGGTCCTGGTGGGCACCCATGTAGTCCAGACGCTCATGAACTTTGCCCCCAAAGACCTGGACGAgtggaaggaggaggaggaggaggagccacAAGACAAGAAGCCACCAAAGAAGGTGACGCCCCTGAACACTGTGATCAACATGGACCTGAGAGGACTGCCCATCAGGGACACCAAAATCCCTATCAACCCCATCAACCTGGTCACAGCGCCCCTGAAGAAAGGGCCACTTAAGCTGCTGAAGGAGGAGGAGCTAGAAGAAGAGGAGCCAGAGAAGGAGGAACTGGACTGGTGGTCGAAGTACTACGCCTCACTGGCCGAGCTGGAGAACCAGGTGGAAGGTGGGAATTTAAACATGGCGACGATCGAAGCGGAAGAAGACGATGCGAACGTGTTGGTCGAAGTCGAGCCCCCCAAACCCAAGAGGAAGATGATTTGCACTTTGAAACTTTATAAGTCCGAACTGGAGAACGAGTTTGAAGAGTTCATGGACTGGCTGCACACCTTCCCCATCTACAAAGGGAGAGCCAACTGTGAGAAtgaggaggaagatgaagagGAGCGAACCATGGGCAAATACAAGGGCTCTTTCTTAATTTACCCCATTTCACAAGAAGACGAGGACGCGGAGTGTAAGATCACCAAAGGAATCCCCAAAAACGTGCCCATTAAAGTCCTGGTGAGGGTCTACGTGGTGAAGGCAACCAACCTGGCTCCCACCGACCCCAACGGCAAGGCAGACCCCTACGTAGTGGTGAAGACAGAGCTCTCCCTCATGGTTTACGATCATGACCTGGTGGGCTCAGATGACCTGATCGGCGAGACCCGGATCGACCTGGAAAACCGTCTGTACAGCCGGCACCGGGCGGCCTGTGGCCTGGCACTGTACTATGACAAGGAAGGTTACAATCAGTGGCACGATGCCAAGAAGCCGACCGCCATCCTGGCTGACCTGTGCCGCAAGAACGGGATCCCTTCACCAGAATACCGCGAGGCAGAAGTGAAAGTCCTCAACAAGATATTTAAAGTCCCCAACGAGGCATTCCCAGAAGAGCTGgttaagaaaaacaagaagactGAGGAGGACATCCTGGAGTTGGACGAGCACAAGGCACTCAGCGTGCTGCACCGCTGGGCCGAGATGAGGGAGTTCAGTGAGGGTGCCTGCGCCCTGGTCCCCGAGCACGTTGAGATCCGCTCGTTGCTCAACTCTGAAAAACCTGGGCTGGCACAGGGTTACGTCCACATGTGGATTGACATGTTTCCTGTGGATGTGCCAGCCCCGCCCCCGGTCAACATCAAGCCCCGCCTCCCCATAAGCTACGAGTTGCGTGTCATCATTTGGAACGCCGATGATGTGGTTCTGGATGACGTGAATCCGTTCACCGGGGAGCTGTCCAGCGACATCTACATCAAAGGCTGGATCAAGGGGCTGGAGGATGAGAAGCAGGAGACGGACGTCCACTTCAACTCTTTGACGGGGGAGGGCAACTTCAACTGGAGGTTTGTGTTTCGCTTCGACTACCTGCCCACAGAGAAGGAGCTCACCTACAAGAAGAAGGAGTCCATCTTCTCCCTGGATGAGTCCGAATTCCGGCAGCCCGCTGTGCTAGTGCTGCAGGTTTGGGACTACGACCGCATCGGTGCCAATGACTTCCTGGGGTCCATTGAGCTGCGTCTGAATGACATGGTGAGAGCGGCCAAGTCCTCAGACCAGTGCAGCGTCAAGATGGCCAAGGACAAGGCCAGCCCACGCTTCTCCATCTTCAGGAGCAAAAGGATGAAGGGCTGGTGGCCCCTGATCAAGCTGAAGAGCCAGGAGGACATAGAGAGGGAGGAGCGGGAGGCGGAGGAGGCCttgaagaacaagaagaagaaaaagaagaaaaaaggcaaaaggGGAGAGATGAAGCCAGAGGACATCCAGTTTGTGGACGCCAGCGGGAACACCTACGTCCTGATGGGGAAGGTGGAAGCGGAGTTCCAGCTGGTGACAGTTGAGGAGGCTGAGAAGAATCCTGTGGGCCGAGCACGCAAGGAACCAGAGCCCCTGGACAAGCCCAAGTCAAAGTACAAGAAGTACATCATTGCCCTCATCGTGCTGGTCATCCTCAcactcttcctcttcctcatcctctACACCTTGCCTGGGCAGATCAGTGGCCTCATCGTCAACGGCTGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007994 True 5823 mRNA 0.57 45 39172488 39204907

Neighbor

gene id symbol gene type direction distance location
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding downstream 22229 39113711 ~ 39150259 (-)
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding downstream 94390 39070580 ~ 39078098 (-)
AMCG00007988 NA coding downstream 187003 38976915 ~ 38985485 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding downstream 222966 38942835 ~ 38949522 (-)
AMCG00007977 NA coding downstream 336351 38831105 ~ 38836137 (-)
AMCG00007997 NA coding upstream 1400 39206307 ~ 39213355 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding upstream 16175 39221082 ~ 39236482 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding upstream 35540 39240447 ~ 39258230 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding upstream 65060 39269967 ~ 39289998 (-)
AMCG00008000 pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380 coding upstream 95737 39300644 ~ 39306779 (-)
G27686 NA non-coding downstream 249800 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 316711 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 392736 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 404920 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 460151 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 250133 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 559023 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 585639 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 637424 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1072256 40277163 ~ 40277647 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 80593 39088557 ~ 39091895 (-)
G27720 NA other downstream 116809 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 122891 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 234825 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 264677 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 295414 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1063365 40268272 ~ 40288574 (-)
G28202 NA other upstream 1811252 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1994582 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 2200884 41405791 ~ 41412224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03677906_03697637 NA coding CI01000306 null 3677906 ~ 3697792 (+)