AMCG00007995 (nfs1,LOC107601922,LOC107559867)


Basic Information

Item Value
gene id AMCG00007995
gene name nfs1,LOC107601922,LOC107559867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39221082 ~ 39236482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007995
CGAAGTTCTTCCGGGTCGGGTCCCCTTGCATAAGCCTTCCGATGAGAGTGTGcgcttgttgttttttattcctacTTCCATGCTGCATGCTTGTGACGCTGTGATATAAAACCCACTTGTAGTGTGACAGGCTGTCAATCGGAAAACTATCACCGACAACTACTGCTGTCGAACCAGGCTTAAGCGCATTACCTGGCcgttttttattgtgttttatgtttttaagtacAAGTTGACAGAAAACTGCTTTTGCGATCCACAATGTTGAGCAGAACCGCGCTGAAGAATGTTTTGGGGGTCAGGGGCGGATTTGCGACTCACAGGTGGAAATACGCCGAAATTGCCAGCAATGCCAAACACCGGGAGAAGGAGATCATCCAAAGCAGGCTGTTGGAGAAAGATGAGCTCCGGCCTCTCTACATGGACTTTCAAGCCACAACCCCGATGgaTCCCCGAGTTCTAGATGCTATGTTGCCCTATCAGGTGAATTACTATGGCAACCCTCATTCTAGAACACACGCCTATGGCTGGGAGAGCGAAAGGGCCATGGAGACCGCAAGAAAACAAGTGGCAGATCTGATTGGAGCCGACCCCAGAGAGATCATCTTCACCAGCGGCGCCACCGAGTCCAACAACATGTCAATTAAGGGCACCGGCCGGTTCTACAAGGCCAAGAAGAAGCACATCATCACCACGCAGACGGAGCACAAGTGCGTGCTGGACTCCTGCCGTGCGCTGGAGGCCGAGGGCTTCGAGATCACCTACCTGCCGGTCAAAACCAACGGCCTGATTGATTTGCAGCAACTGGAGGAAACCATCAGGCCGGACACGAGCCTGGTGTCGGTCATGACTGTGAACAATGAGATCGGAGTGAGACAACCAGTCCAAGACATAGGTCACATCTGTCACTCCCACAAAGTGTTCTTCCACACCGACGCTGCTCAGGCCGTGGGGAAAATCCCGGTGAACGTCAATGAATGGAAGGTGGATCTGATGTCGATCAGCGGGCACAAGATCTACGGTCCCAAAGGTGTGGGAGCACTGTACGTGCGCCGGCGCCCCCGGGTGCGACTGGAGCCCCTGCAGAGCGGCGGTGGGCAGGAGAGGGGTCTGCGCTCCGGCACGGTGCCCACTCCTCTTGCCGTGGGCCTGGGAGCTGCCTGCGAGATCGCACAGCAGGAGATACAGtacgACCACGATCGGGTGTCTATGCTGTCAAACCGGCTGATTCAGAAGATCATGTCCGAGATCCCAGATGTGATAATGAATGGAGACCCTCATCACAGATACCCAGgctGCATCAATCTGTCCTTCGCCTACGTGGAGGGGGAGAGTCTGCTGATGGCCCTGAAGGATGTTGCCCTTTCCTCGGGCAGCGCTTGCACGTCTGCCTCCCTGGAGCCCTCCTATGTTCTACGAGCGATCGGGACGGACGAAGACCTGGCTCACTCTTCTATAAGGTTTGGCATCGGGCGCTTCACCACAGAGGACGAGGTGGATTACACCGCAGAGAAGTGTGTCCAGCAGGTgaagagactgagagagatgAGGTGTGTGTTGGTTCGCCTCAGCATGGCTGTGGTCATCCGCTTGCAAGGTCTGCCCATCGTGGCAGGGACCATGGACATACGCCATTTCTTCTCTGGATTGACCATCCCGGATGGTGGTGTGCATATTGTAGGGGGTGAACATGGTGAGGCTTTTATCGTTTTTGCCACAGACGAAGATGCGAGGCTTGGCATGATGCGTACAGGGGGGACAATCAAGGGGTCGAAAGTGTCACTTTTGCTGAGTAGCAAGACCGAGATGCAGAATATGATTGAGCTTAGCCGCAGGCGTTTCGAAACTGGAAACCTAGAAGGAGCTGCGGGGAATGGGAGTCGGCCGGGGCCTCCTGTCAGTGCGGGGGGTAGTGGAAGGGGCAACTTGCCGACCACAATGCAAGGCTTCAACAGCCCCACCTCTAGCGTGGTCACCACAGCTGCCTCTGCGCACGAGTCCGTTGCCAACAAGAACATCCCCACGTTTTCCACGGCCAGCATGGGTAGCATGCCCCCTAGCTTCAGTAACAACTTCAGCAGCCCCAGTCTAACCATGGGATCCACTATGACCACGGCCATGTCCTCCTTGAACTCTGTCCCACCACCCATGCCCCCTCTGCCCACCATGCCATCACTGCCCCCCATGCCCTCCATCCCACCCATGCCCGTTCCCCCGCCCGTTTCCAGTTTACCTCCAGTTCCCCCTGTCACGCCAATACCACCAGTGCCCCCTGTGCCCCCCATGACACACATGCCACCAATGTCCTCAATGCCACCTTTCAACCCTGGCGTCCCTCCCCCGGTCGGCCCCGTGCCCGGTGGTATGAGCAGCTCAGGGCCACCAATGTCCATGGGAAACCCAAACCACATGTTCCTCGGCCCCATGAATGCGCTGGGGGCCTTAAACCCGCAGGCACACATGAAGCCGCCCGTGGTCAGCCCTGATGAGCTGTACGTTCATCTCCAGGGACTGCCCTTCTCTGCCACAGAGATGGATGTGCGGGACTTTTTCCACGGCCTGGGGTTGGACTCTGTCCGCCTGCTCCGGGACCACCTAGGCCGGAGCAGCGGCAGGGCCTTCACCAAGTTCTTCACGCCGCAGGACACCTTCGAAGCACTGAAGCGAAACACAGCCATGATGGGACAGCGCTATGTGGAGATCTCCCCCGCCACCGAGAGGCAGTGGCTGGCCTCTGGCGGGGGGATGGCTGGAAGTGGCCAAGGACTGTCCAAACATGGCAGCGACCACTCTGAGCAGGACCAACATCGCCGCATTAGGTCCAGCTCGGAGTCCCCCTCTGGACGTGACCGGGCAAGGTCCCGCTCCCCCCACAAGCAAGAGTTCTGCGTGTATCTGAAGGGCCTGCCGTACGAGGCAGAAAACAAGCAGATCTTCGAGTTCTTCAAAAACCTAGACATCGTGGAGGACAGCATCTACATCGCCTATGGGCCCAACGGCAGGGCCACCGGCGAGGGCTTTGTGGAGTTCCGTAACGAAATGGACTACAAGGCGGCGCTGGGCTGCCACATGCAGTACATGGGCAGCCGCTTCATCCAGGTGCACCCTATCACTAAGAAAGGCATGTTCGAAAAGATCGACGTGATCCGGAAGAGGATGCAGGGCTCGCAGCAGAGTGAGCAGAAGACGGGCTCGTCCGATGGCAGCGGGGACAAGACCACGTCCAGGAGCTGCGGCCACATCTCCAATATCCCTTACAACGTATCCAAGAAAGACGTCCAGCTGTTCCTGGAAGGGATCCAGCTGTTCGAAGACAGCCTCAAAGTTCTCGTCGATAGCAATGGGCAGGGGCTAGGGCAGGCCATCATGCAGTTCAGGTCCGAGGAGGAGGCGCTCAAAGCTGAGCGGTTACACAGGCAGAAGTTAAATGGCAGGGACGCCTTCGTCCACCTGGTGACATTCGAGCAGATGAAAGAAATAGAGAGGAACCCGCCACCGCAGGCAAAGAGAGGCCAGAAAGCGCAGGGCAACTCCCAAACCCACTCCTACCCTAGTGTTTCTGGGGACGAGTATGCCTTCCTCAGAAACGCTGCGGCCAACATGAGTAACGGCCCCCCTTTTGCCAACCCGTTCAGCGTCCCCGGTAACGGCCTCGCAGGGCCCCCTCCCCCCTTGCCCCCGATGGGAGTGGCAGGGTTAGGCGATGTTCTCATGAACGTGCCCCCTCCCATGGTGGGCAGCCACTTGCCCAGTCCTATGCTGGAGCCCCCAGGTTTTAGACCCGGACCTGGCAGTAATAACGGTCCGCCTGGGTTTGCGGCAGGGCCCGAGGGCCTGAGGGGGCTGCCACCATTTGATAATGGTCCTAGAAAAAACAGCGGCCCGCCAAATCGAGGGGGCGGGCAGGGACGACCGGGGGGATCCCAGCCGGGCTTCGGCCCAGGTTCTGATGCAATGAGAGGACCTCCGGGTTTAAGCGGAGGTCCTGGCAACCCACGGCCAACCATTGTTAAGATACAGAACATGCCCTTCACTGTCACTGTGGATGAAATTCTAGATTTCTTTTACGGTTATCAAGTACTGCCCGGCTCGGTCTGCCTGCAGTTCAGTGACAAAGGCTTGCCCACTGGCGAAGCAATGGTGGCCTTCGAGTCCCACGATGAGGCAATGTCTGCAGTTTTGGATCTTAATGACAGGCCTATAGGATCCAGAAAAGTCAAAATCACGCTAGGGTAGAAGAAGGGTATCCGGATTTGATTTGTAtcgtttagttttttaaagaagtgtctccaATCTGTGAAACGCCAGAAAGACCCAGATGTGCGTCTTTCTGCGAACCCCCAGATGAAGTGAATTTATTTAAGGAGAAGGTTGTTTCACTTCATGACACCAGGAAGATAGTATTAGTCCATAGGTCATTTGCCAAGTTAATCAAGTTCTCTAGGCTTAGAAAggtgaaagaaattaaaatgaagacgGACACATTGTGAATTTAACCCAGTAACTTGACTAGTCCAGTAGACTGTGGGACTTGTCTTCTTAACGAAGCGTCTTTCTTAAACGGGGAGCCAGAATCCTATGCTGTAATGAGCTGAAGCATCTTCGTAAAGACACAGATTTGGGGTGGGCCGGGGTGGGTGGGGGATTAGATTCGGCTTGGAGAGTCTGATGCTGACATTCTTGTGTTGAAAGCATGTGATAGTTTTGTTTAAAGGCCCTgacatatttgtgtatttgtattatttctcttgttgaatttcatgttttgtttttttcttgtttttttaattttgttttttgcatttcctaaacaagaaaaacaaagtgtggCTGGTACTGTGTACACTGAGTGCTGCTATGCCAGGTGTGTGCACAGCCTTTATACAGCTTTTGAAGAAGAAGCAGTTTTCATTTGCTAGCTAGTTTTGTAAGCTCTGAACATGTACCTAAGTTTAGGTtgttatgtttgtttctgttttcctcttttccCTTCGTAAATGCCATGCTGATATGGTTGCTGTCATGTGCAAGAAATTCCTTAATTCAGTCCAGAATTATGATCAATATTCAAATTTTccaaagtatttaaatgtgaaaggaTGAGGTAATTGTGTTTCTGATAAAGAATCTTTAAATGGCAGCAACTTGAAACAATGTTTCCATTTTGCTCTCTGCAAGCCTTTACGAAGTTTGTACACTACGTGCAGTTAATAGAATGCATCATGTCTGCCGAGATGTCAATCCTTTTTGGgattcctttttgttttgttttttgtgtgtgtggtggtatTGAACCAGATCAATTGTAAgtaaatgttgcatttatttggaCTCTTGACTGTGACTTCcagttcaaatatatatattttttaattttattttgttctgcagtTGTATATACTGTTCAGCTTACACGTTTGTCAATAAACTGCATTCCTAAAAAGAATTTATCTAAAAGATATTGTATACTCTTtcattgtgctgtttttttttttttgctgttttgatGAGTTTTGTGTAGAGCATCTGAAGAAGCACAAATCCACTTGTCTGAATTTTCCACATGTCCCTGGTGCAGGTACAAAGGGAGAAAGGATGCGGCAACAATGCATAGCTGAGATTGAGGTTGAGATTGTGTTTAATTCTCCACATACACCTTAATGTTTCTGAGTTGTGTGTTTCGAGTTTGCTGTTGTCTGTGCGATCACAAGCAATGCCGAGACAG

Function

symbol description
nfs1 Predicted to enable cysteine desulfurase activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within [2Fe-2S] cluster assembly. Predicted to be active in cytosol; mitochondrion; and nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human NFS1 (NFS1 cysteine desulfurase).

NR:

description
PREDICTED: cysteine desulfurase, mitochondrial isoform X1

GO:

id name namespace
GO:0006534 cysteine metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0031071 cysteine desulfurase activity molecular_function

KEGG:

id description
K04487 iscS, NFS1; cysteine desulfurase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007995 True 5725 mRNA 0.52 13 39221082 39236482

Neighbor

gene id symbol gene type direction distance location
AMCG00007997 NA coding downstream 7727 39206307 ~ 39213355 (-)
AMCG00007994 NA coding downstream 16175 39172488 ~ 39204907 (-)
AMCG00007992 LOC108424671,LOC107566077,LOC107691346 coding downstream 70823 39113711 ~ 39150259 (-)
AMCG00007989 map1lc3a,LOC101077757,LOC102789823,LOC107685654 coding downstream 142984 39070580 ~ 39078098 (-)
AMCG00007988 NA coding downstream 235597 38976915 ~ 38985485 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding upstream 3965 39240447 ~ 39258230 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding upstream 33485 39269967 ~ 39289998 (-)
AMCG00008000 pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380 coding upstream 64162 39300644 ~ 39306779 (-)
AMCG00008006 LOC106565397,LOC106583327 coding upstream 229089 39465571 ~ 39472392 (-)
AMCG00008015 tbc1d20 coding upstream 246104 39482586 ~ 39489763 (-)
G27686 NA non-coding downstream 298394 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 365305 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 441330 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 453514 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 508745 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 218558 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 527448 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 554064 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 605849 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 1040681 40277163 ~ 40277647 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 129187 39088557 ~ 39091895 (-)
G27720 NA other downstream 165403 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 171485 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 283419 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 313271 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 263839 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 1031790 40268272 ~ 40288574 (-)
G28202 NA other upstream 1779677 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1963007 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 2169309 41405791 ~ 41412224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03658929_03661523 RBM12 coding CI01000306 null 3658640 ~ 3662015 (+)