AMCG00007998


Basic Information

Item Value
gene id AMCG00007998
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39238048 ~ 39239628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007998
ATgtttgctgtacattttttgAGCCACTTTGCCACCCATCTTGAAAAAGGCCAGCGGGGGGTGATGCGCAGGCTGAGAGCGGGGACTCTAAGCCATTTGCCCAGACTGGTGCGCAGTGTGAGCgatgtgggtctgtggcccccaGTGGTTCCCTCAGGCGCAAGTTACCAGTTCACAGCGGCACCGCAGAGGAGGTACAGAGCCAAGGCGCAGACCAGCCAGATGTCCATTTCCCAGGTGAACCATACGTTGAAAGCCAATGAATACAGCTACAAATTCCATGAATATGAGGGGAGGAATGCCAGCTCGGTGCTGGGGTTTGACAGCAACCTCTTGGCCTCCAATGTGCCCAGCGAGGACCGGCGCAGTGCGGCCACATGCCTGCAGACTAAGGGCATGCTGTTCGGGGTGTTCGACGGGCACGCTGGCTCTGCGTGCGCGCAGGCCGTGAGCGAGCGGCTCTTCTACTACATCGCCGTGGCACTGCTGCCGCTGAAGACGCTGATTGACATCGAGGAGGCGGTGGAGAACGAGCGGCCCCTGTTCCCTGTGCTGCAGTGGCACAAGCACCCTAATGACTATGTCAGCACTGACTCCGGCAAGCTGTACTTCAACAGCCTGCGCACCTACTGGCAGGAGCGGATCGACCTGGACGATGGCGAGGACAGCCGGGACATCCCAACTGCTCTGGTGGACGCCTTCAAGCGACTGGACAACGACATCTCCCTGGAGGCGCAGGTGGACGAAGGGGACCCCTTCTCACACTGCACACCACTGCGCGTGGCCATATCGGGGTGCACCGCTTGCATCGCACACCTGGACGGAGTCGACCTGCACGTGGCCAACGTTGGGGACAGCAGGGCCGTGCTGGGAGTGCAAAATGACGATGGCTCCTGGACTGCCCTGACCATCAGCAACGACCACAACGCGCAGAACCCAGAGGAGCTCTGGAGGGTCCGGTCGGAACACCCGGCCTTGGAGGAGAAGACTGTGGTCAAGCATGAccggctgctgggcctcctcaTGCCCTTCAGGGCATTCGGGGATATCAAGTTCAAATGGAGCAGCGAGCTCCTGAGCAGGGTGCTGGAGACCCGGCCCGAGCTGCTGGCCGGGAACGAATATGCCAAGATGCTCCCGGCCAACTACCACACCCCACCCTACCTCATCGCCGAGCCCGAGGTCACCCACCACAGGCTGCGGCCTCAGGACAAGTTCCTGATCCTGGCCACGGACGGGCTGTGGGACCAGATGCACAGGCAGAACGTCATCCAGGTCATAGGAGAGCACTTGACCGGCCTGCACTGGCAGAAGCCCATATCAGGCCTGTCCTTCACCCTGGGCCAGATGCACAGCTTGCTGGTGGAGAGAAAAGCCCGGGCTTCGTCTGCATTCGAGGACCACAACATGGCCACACACTTAATCAGACACTGTCTAGGAGGCGACGGGTTCGGCATGGTGGACCGCAGGCGGCTGGCCAAGATGCTTAGCTTACCCCCAGATCTGTCCAGGATGTACAGGGATGACATTACAGTCACTGTGATCCAGCTAAACACTCCCGTCATTCAGACACATTACTAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007998 True 1581 mRNA 0.60 1 39238048 39239628

Neighbor

gene id symbol gene type direction distance location
AMCG00007991 NA coding upstream 125049 39104175 ~ 39112999 (+)
AMCG00007985 fam210b,LOC102797503 coding upstream 168742 39060647 ~ 39069306 (+)
AMCG00007987 LOC107703109 coding upstream 185128 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 225197 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 312377 38921036 ~ 38925671 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 137350 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 172062 39411690 ~ 39413775 (+)
AMCG00008005 NA coding downstream 206442 39446070 ~ 39455574 (+)
AMCG00008003 NA coding downstream 217035 39456663 ~ 39463302 (+)
AMCG00008002 NA coding downstream 233188 39472816 ~ 39482333 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 29755 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 178314 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 182421 39054539 ~ 39055627 (+)
G27670 NA non-coding upstream 329866 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 382281 38855531 ~ 38855767 (+)
G27781 NA non-coding downstream 26794 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 51340 39290968 ~ 39291221 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 364984 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 718359 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 812262 40051890 ~ 40060205 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 529133 38692739 ~ 38708915 (+)
G27551 NA other upstream 801453 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 814893 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1067902 38168570 ~ 38170146 (+)
G27518 NA other upstream 1091198 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 263451 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 270783 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 300592 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 577399 39817027 ~ 39834952 (+)
G27974 NA other downstream 817004 40056632 ~ 40059386 (+)

Expression


Co-expression Network