AMCG00008000 (pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380)


Basic Information

Item Value
gene id AMCG00008000
gene name pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39300644 ~ 39306779 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008000
GGATAATGCAAACATTTTGCTGAGTTCCTTGTAAGGATAAAACCCTATGTCTTAGGATGGGTAACCTTTGTACAGCATGCTTGGGAAGCATAGAGCAGGTCTTGAAAGCCACAGATGttCCTGCCCAACTCCTTCCCCCActccaaaaaaagaaacatccaaaAAAGGAGCATCAAATCCAGCAGTCAAAACCTCTCTCTCAAGACATCATCTGGAAAGAAGCAGCtggacaatatttaaaatgcacagcaaGGATCAAATATGCTATGACGAGTACCAGAGGACTGCAGACTGGCTCCTGTCCCAGACCAGACACAGACCCAACGTGGCTATAATCTGTGGCTCTGGGCTGGGCATGCTGGCCGAGGCCCTGAAGTGCCAGGACTCCTTTAGCTACGCTGACATCCCCAACTTCCCCCAGAGCACGGTGCAGGGACATGCCAGCCGGCTGGTGTTCGGAGAGCTGAGGGGAAAGacctgtgtgtgcatgcagGGCCGCTTCCACATGTACGAGGGCCACCCGCTGAGCAAGGTGACCTTCCCAGTGCGGGTGTTCAAGCTGCTGGGCGTGCAGACGCTGGTTGTCACCAACGCAGCAGGCTCCCTGGCGGACAGCTACAGCACCGGCGACATCATGATCATCAAGGACCACATCAACATGCCCGGCCTTGCAGGGATCAACCCGCTCAACGGACCCAACGATGAGAAGTTCGGCCCTCGTTTCCCCCCCATGTCAGGAGTGTACGACAAGGACCTGCGCAAGATGGCGCTGGACATCTGCAAGAGCCTGGGCTATTCGCAGTTCGTGCAAGAGGGGGTGTACTGCATGGTGGGCGGCCCCAACTTCGAGACCATCGCAGAGGCACGCTTCCTGCACAAGCTGGGCGCAGACGCCGTAGGTATGAGCACGGCCCCTGAGGTTTTGACTGCCAGCCACTGCGGGCTGCGTGTGTTCGGGCTTTCCCTCATCACCAACAAGGTGGTGAAGGACTATGAGGACCAGGAGAAGGTGGACCACGCGGGAGTGCTGGGGGTGGGCCTGATGCGCTCCGAGACCCTGCAGACGCTGGTGACAGAGCTGGTGTCCCGACTGGAAATCAACAACAACCGTGTGGAGTGAGGAGGAGCCAGGAGCAATGTCAGAAGCAGCTATGAGCCCCTTTGGTAAAGTCAAGGCTGCAGCTTTTACTGAACTGGCCCTGCTCTGTCTAGCTCAAGTGGTAATATCCTCCTGTGAAGCTCTCTATACCATCTCTGCACAGAGCACTATATCACATACAAATTGgttgattgttttttaacactgtCTATTTCTGACCCTGTAGTACATCCCTGAGCTGGGCTGTTAGTCCCCAGTTCTCCCACAATAGACAAAGTTATGGGACCCCCAGTGTTTTTATGTGAGCTCCTGTTATTGTTCCTGTGTGACATCTGAACATCCTTGCCATCAAACTGCAATTTCCTGAAATACCGGATAGTTAATTTCCTGGAAATTCCAAAGTAATGGAGCAAACAAGTCGACCACACAACTATTTCAAGAACGTGTATAATATCTGATATTTCCTCCTTTGTGTTCCACAGGgcagtgtatgtttttatttctgttgtcaagatagacaatacaatttaaataactgaTTTAGATTGCAACCCACCCCCTATCTGTGACTGGCCTTTCATCACACTGTAGGAGATTTAAATGTTCTAACGCgtcagtaaaaaataataccCAAGACACATAAGACACaagtatattttttgtactgtCTTCATATTATAGTTTCACAGAGCTCCTGTATTGTAGTCATGGTAGAATGATTAACATGTACTGTAACATTACTGTtaatggtatttatttaaacgTGTATGCTCTTGTAAATCTTGTAAATCACCATCCATAAAAGCATCGGACGAAATGCTGTTTTTAGAACTAACtaccaaattacttttttttaaatcttcactAGTTGGTTCCTGATGTTAATGAGATGTAGAAAGGAATGTTTCAGTCCATCAATGAGGTCATCACTTCTATCTATCTGTCATTGACAAATAAAACCAACCGGGGAAGAGAAAGcctttgtgtttatgtaaatcATTTGACACGTGGATCGTCTGCATTGttaaaatacttacatttacatttgtggaGTTAGGAAAGTGTCTCAGGATCGCAAAAAATTTAGGTGGGGGAAGTCAGGGTGCGGTTAAAATGCTTAGGCAGGTGTGTGCCTTAGCTAATCTAAGTGAAAATCAGATCAGGTTCACTTTCATTGGATTTGACTGGAGAAACTGAATTCCTATCTGGATCAGAACtggcaatgaaaatgtatctgatTAGAATGCTCTCCGACCATCAATTAATCACTGTCACCCGCCATCACTGGACATCTGATGTGCACATGAGTTGTCTTGTCATTTTACTTATATATTGCTTTACTCAGTCCTACAATATGAACATtcaatgcctttcattttaaaatataatgtttttaaaatcatatataatatatttaaccaATCGATTATTTGGCGATTGACCCCCATCCTGTTCAGCATTGTTACTGGGACTGATCCTTCTGTGATCTACTTCAGAATCATTCATCTGCAGGTGAATTCTTCATTCTTTCGTAAATCAggaaaaacaagatttaaatgTGTGAGAAGAGACATGGAGAAACGTGCGTTGTTTAACACATTGTGCCCCATATTGCAATCAATTCTGCTCTTCCTCCTACACTCATGAACACACTCTTACAGAATGAAACCCCCCCGGCCCCTTCGAGATTCCCCTCACTGCAGCTCACCTGTCCATCAGGGGCAGGACTCCAGTTACACAGATAACTTTCCCTCTCGCAGAGCTCCAGGAAATGGGAGGACAGGTGTCcaaaaggaagaggaagaggaatcCCAGAGCAGCAGGAGTGATGGCCCAgatttgggggtgggggagactAGTTAGCGGGAATGGGGAGTGGAGGAG

Function

symbol description
pnp4a Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; iridoblast; neural crest; optic vesicle; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

NR:

description
PREDICTED: purine nucleoside phosphorylase-like

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008000 True 2983 mRNA 0.46 8 39300644 39306779

Neighbor

gene id symbol gene type direction distance location
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding downstream 10646 39269967 ~ 39289998 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding downstream 42414 39240447 ~ 39258230 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding downstream 64162 39221082 ~ 39236482 (-)
AMCG00007997 NA coding downstream 87289 39206307 ~ 39213355 (-)
AMCG00007994 NA coding downstream 95737 39172488 ~ 39204907 (-)
AMCG00008006 LOC106565397,LOC106583327 coding upstream 158792 39465571 ~ 39472392 (-)
AMCG00008015 tbc1d20 coding upstream 175807 39482586 ~ 39489763 (-)
AMCG00008018 ube2c,LOC107744406 coding upstream 206687 39513466 ~ 39517267 (-)
AMCG00008017 LOC107744395,LOC107587627 coding upstream 211665 39518444 ~ 39525326 (-)
AMCG00008014 pcif1 coding upstream 221610 39528389 ~ 39541946 (-)
G27686 NA non-coding downstream 377956 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 444867 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 520892 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 533076 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 588307 38710852 ~ 38712337 (-)
G27833 NA non-coding upstream 148261 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 457151 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 483767 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 535552 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 970384 40277163 ~ 40277647 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 208749 39088557 ~ 39091895 (-)
G27720 NA other downstream 244965 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 251047 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 362981 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 392833 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 193542 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 961493 40268272 ~ 40288574 (-)
G28202 NA other upstream 1709380 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1892710 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 2099012 41405791 ~ 41412224 (-)

Expression


Co-expression Network