AMCG00008003


Basic Information

Item Value
gene id AMCG00008003
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39456663 ~ 39463302 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008003
ATGAGGCAGGTCCGCGGGCGTCTTGCTAAAACCGAGCTGTTTCCTCATATTCGCCCCGTCTATTCTCGCAGCGCCGGTGACTCAGGCTTCCGCTCCTGTCACTGGAGAATGAGTGTGAACGTGCAGCCCGCTCCCCGCACTCTCCCCCTGAGGCTGAAGCGGCTGGACTTCGAGGACTCCCTGGACGCCGACAGCCCGAAATGCAAGCGCCCCCGCCTGAGCCAGCCCCCCTCGCCCGGCCTGGTGCCCTGCCTGCGCCCGCTCTCCCAGAGTCCCTGCCCCGGGGGCGCCGAGCCCTGCGTCTCCCGCGTGGGACCCTACATCCTGCTGGAGGCGAGTGAGGGAGCGCACAGCTACAGGGCCGTGCACAGCGTCACCGAGCAGGAGTATACCTGCAAGgTCTTCTCCATGAAGAGGTACCAGGAGCTGATTGCCCCCTACACCCGGCTGCTGCCCCATGAGAACATCCGGCGTGTGTGTGAGGTGGTGACGGGCGAGCGCAGCGTGTACGTGTTCTTCGCTCGCAGCTACGGCGACATGCACTCGCACGTGCGCTCCTGCAAGCGGTTGCGCGAGGAGGAGGCCGCCCAGCTCTTCGGCCAGATGGTGGCGGCGGTGGCCCACTGCCACGAGCACGGCGTGGTGCTCCGGGACCTCAAGCTGCGGAAGTTCGTGTTCGCCGACCCCCAGAGGACGAAGCTGGTGCTGGAAAATCTGGAGGACTCCTGCCTGCTGAAGGGGGAGGACGACTCCTTGACAGACAAGCACGGATGCCCGGCCTACGTGGGGCCCGAGATCCTGAACTCGCGGCACTCTTACTCTGGCAAGGCGGCGGACATCTGGAGCCTGGGGGTGGTGCTGTACACCATGCTGGTGGGGCGCTATCCCTTCCAGGACGTGGAGCCTGCCGCCCTCTTCAGCAAGATCCGCCGGGGCATGTTCTCCGTGCCCGAGTTCCTGTCCCCCAGGGCCAAGTGTCTGGTGCGCTGCATGCTGCGCAAGTCCCCTACTGAACGGCTGGAGGCCTCCGAGCTCCTGCTACACCCCTGGCTCACTTGTGGGGGGGCACCTCCTGCCACCCCCTCCGCAGGCCCCACGGACAGGAGCGGCTCCGACCAGGTGGTGCCGGACTTCGACAAAAGTGAAGATGCTGACTGTTTataattctttctttttaaaggataagataataaacagacagacatataAAATGAACAAGAAAACATGGCAGGGCTGCACCCGGACTACACTccgctctccccttctctctgttGCCGGTGGCAGTGTTCTCGGAGAAGGCCGatgcagagagaggagagagagggagcgtcGTGCAGGGCCAGGCCAGGGGACACCGGACCAAGACTCGGCACCGTCCCGGGCCACTGAGCCCCGCAGAGAGGTGCTGCGGCGCGGACAGCGATCTGCCGAGAACTGAAATCTGTAGCAGTTACACTAGTGGATAACGTCGCTGCGGGACTGTGTGTGAGACTGACAGACTTTTCAGAGGTACAATCTGAGGTTGTGAAAGGCCTTGAAGGTGCCTGACATAGCGACATACAATTTTGTTCATGTCCTTAACGCATTGAACATGGTAGCAAACGCGTGTCCAGCAGGAGATGACAGGACTGCGGTGTACACTGCACCAGGAGGCCGGTGATGAAGACACAGTAGAGACTAAGCCAAGCCAGGGCCATTGTGTTACATAGGCATACAAATATctatgaaacaaatattttaaaatcaaaattagTTTTGTACAGAAGCTGGTGGACACAGTGGAACAGTGGACAGaccctgttgttgtttttttctttttcttaaagaACATTGCCTGGTTTAAGATAACGATGACTTGCTTGCTGGCATTAAGTTCAGGTGGAAGCTGAGAAGCATCCTTCAGCACAATTCAGAAtgatagtatttgttttattcgtACGCATTACTGTCCTGGACACCGCTGACCGGTCGCTTCCTCCTCCTGTGTGGTCAACGGGCTGCGTACGTCAGCTGCGGCCCGCCGGTGCCTCGTGCGGTCATGGCACCGCCTGTACATAGCCGTGATTCATTACCAGTATTCCCCTTTGCATAAAGCTACATTTGTGACGAGCACAGCAGTGTGAAGAGAGCGCGACAATACGCGAGACGGTCGGGGGGAGCCTCGCCGAGGACAGGGAAATCGGCGTAGCATTACTGACGTCAGATACCTCCGAAACTGAATCGAATCCTGGAACACTTGAAGCACAATATGTTTAGTGTGCCTTTTGTCTTTGTGCTGTTTACATATTATTTGTAGTGGAACCCCGGGCCCAATCTTTTGAAGTGCCTTTATTACAGCGGGTGGGGGGCGGCGGGACTCCCAGATTCTGTTttccactcctcctcctcccccctgcTCTTCTATTTCCTCCCTTCCGCCCCCATCCTGAACCACATCCATTAAGGAGTTTTGTACCAAAGAGTCTTTCTGCAGCCCCTCCCGTCTGCACCGCACATCCGGacccttttttctttcccctcatTAAAAGGTCAGCAGTGAATATTTTTCCGCCCTTAGCATTAGCATTGCAGACGCATCCCCCCCCCACAAGTCTCACCCTTTCCAAGGTGCATCGTTCCTGTTAATGCAAAGGACGACGGATCATATAATTGGAAACGGGAAGGTGGTTGTCGGAAAGGTTAGACGGGGCAACAgcttgtgtgtgagtgtgtgtggagggTGGTGGATAGAGATAGTTGGATAGAGACTGAAGAAGATACCAGATTCTTGTTTGCTTAGATCTACAAGAATCCCCATATAAGGGCAAGATGGCATTAAAATCCTGTCGACCTATGGAACAAGCACGAGGCATTGTGCAGAGCCGACCCAATGGCCCCTTCGCGTGGCCCCCGTGCCACTGAGCGTCTGTGCTGCACGCAAACTcatttgtgaatttgtaaatatggttttgtaatttttgcaagaaatgcacacactacattgttttgttttttggggagggggggggttattttattttttgtttatgcaAGAGAAgtgattgtatttttgttgttgccaatacaaaataaaaccataataaaaaaaaaattaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K19518 TRIB3; tribbles homolog 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008003 True 3098 mRNA 0.55 4 39456663 39463302

Neighbor

gene id symbol gene type direction distance location
AMCG00008005 NA coding upstream 1089 39446070 ~ 39455574 (+)
AMCG00008004 NA coding upstream 42888 39411690 ~ 39413775 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding upstream 78609 39376978 ~ 39378054 (+)
AMCG00007998 NA coding upstream 217035 39238048 ~ 39239628 (+)
AMCG00007991 NA coding upstream 343664 39104175 ~ 39112999 (+)
AMCG00008002 NA coding downstream 9514 39472816 ~ 39482333 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding downstream 31543 39494845 ~ 39503019 (+)
AMCG00008013 NA coding downstream 46157 39509459 ~ 39511872 (+)
AMCG00008012 NA coding downstream 48971 39512273 ~ 39512791 (+)
AMCG00008009 NA coding downstream 86774 39550076 ~ 39555822 (+)
G27788 NA non-coding upstream 165442 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 189990 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 248370 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 396929 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 401036 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 141310 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 494685 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 588588 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 814112 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1288173 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 747748 38692739 ~ 38708915 (+)
G27551 NA other upstream 1020068 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1033508 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1286517 38168570 ~ 38170146 (+)
G27518 NA other upstream 1309813 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 39777 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 47109 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 76918 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 353725 39817027 ~ 39834952 (+)
G27974 NA other downstream 593330 40056632 ~ 40059386 (+)

Expression


Co-expression Network