AMCG00008004


Basic Information

Item Value
gene id AMCG00008004
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39411690 ~ 39413775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008004
ATGCTGCTATGGGGGCCTTATCCCGTGTCACCAGCGATCAGACCAATTGAATGGCCACCGGGGCCCACGGGCGCAGGACTGATGACATTTGGCGGCCAGCTCTGCTCACACGCGCGACCAGATGAACGCAATCACCCACTGAAGGTCACCGCAGGGATCTCCATGGCGACCAGGCGGGCTGGGAAGATGTTTTTTACACAAACATTAAGCTTTAGGcgagtgtgtgtgcaggggtcGGGGCCCATGGCCGGCTGTCCAGAGCTGCCCTGCTGCCCTCATTGCTCCGGTAGTTCAGGGGCCCAGACTTTCGGGGTGCGCTCCTACCTGCACCTCTTCTATGAGGACTGCACCTTCTCAGCACCCCAAGACCAGGCGGAGCTGCAGCCAAAGAGGGCACCCGTCTCTAGGACCTCCTGGCCCTCGTTGCTCTGGAAGGCCTGCCTCACCACCGGAGTGCTGCTGGCAGTGACGGGGGGGCTGGCCCTGGCCATGGGCGTCCTGGTGCCACCCAGGATCGAGGGCTTCGGAGAGGGAGAGCTGCTAGTGGTGGATGAACGCGCGATCCGGCACAACCGTGCTCTGGCTGCCTGCCGCATGGCGGGGGGGCTGCTGCTGGCCCTGGGGGGCACACCTCTCCTGGCCTGCGTCCTGGCGCTGCCCGTGTGCCGGGTGATGGAGAGGATCAGGGACAAcagcttctcctcctcctcctccccctgctGCTGCACCCCCGACAGCAGGCCCATCTGCAGGCGTGTGCCGAACACCAGGTTCACTCCCTGCGTGTCGCCCATCCACACCGCGCTGCCCATCGCACTGTCACCCAAACTCTCCATCCAGCCCAGAGCGAGGCCTTGAGCCCGAGCCCCTGGTAGAGGACTCACCCGCACATCGCTGGAGACCCCAGGGCGAGGGGGGGCGGGTTCCTGTCTTCCCTGGATACTGTAAACTGGAGTCTCTGCCGCATCCAGGGTTGCCGCCGGGAATCCATCCGTTTCATCCGTCACCAGTGACACACCCTGTAGCTGGAGGGCTGTTGAACTCTTTCACGATCAGTATTGTCTTTGTGAGATCCGCGTCACcgtgtctgtccctctctgtctcccgcTGCGATCAGGCCTTTCACTTCAGCTTGTtgccttattttaaataaagacgGTATGTGCCCTGAAGACTGCGCCACCGTGTCTCTGTTTATAAAGCTTCCCTACCCATAACCACTgagaagagcagcagcagcagcaaaacacTTCCGAAATGACCTggagatgtgtgtgtggaaataaatcaaaatcaaaacagtttAACAATGGACATCTGCAGCCATTTAAGACTAGTCATGTATTaagtaatagtaattataatcaCCATAATAACAGCAATGCACGTTTACAACATACCAATGTTTATTCTACGTGATCATGAATACTATcctgtaatgtaatttaaaacaggaGAATGAGTGTCACAGAGCAGAGGGCAGGAGGCTTACCAGGAGCCCCGCGATTCAATTTGAAAAGACCTCCCTTATCTGAAGATTGGTAGCTGCTGCGCCAGGAGAGTTTCAGTGGCGCTTGTGTCATTATGTGAAATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008004 True 1597 mRNA 0.57 3 39411690 39413775

Neighbor

gene id symbol gene type direction distance location
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding upstream 33636 39376978 ~ 39378054 (+)
AMCG00007998 NA coding upstream 172062 39238048 ~ 39239628 (+)
AMCG00007991 NA coding upstream 298691 39104175 ~ 39112999 (+)
AMCG00007985 fam210b,LOC102797503 coding upstream 342384 39060647 ~ 39069306 (+)
AMCG00007987 LOC107703109 coding upstream 358770 39050962 ~ 39052920 (+)
AMCG00008005 NA coding downstream 32295 39446070 ~ 39455574 (+)
AMCG00008003 NA coding downstream 42888 39456663 ~ 39463302 (+)
AMCG00008002 NA coding downstream 59041 39472816 ~ 39482333 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding downstream 81070 39494845 ~ 39503019 (+)
AMCG00008013 NA coding downstream 95684 39509459 ~ 39511872 (+)
G27788 NA non-coding upstream 120469 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 145017 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 203397 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 351956 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 356063 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 190837 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 544212 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 638115 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 863639 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1337700 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 702775 38692739 ~ 38708915 (+)
G27551 NA other upstream 975095 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 988535 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1241544 38168570 ~ 38170146 (+)
G27518 NA other upstream 1264840 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 89304 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 96636 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 126445 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 403252 39817027 ~ 39834952 (+)
G27974 NA other downstream 642857 40056632 ~ 40059386 (+)

Expression


Co-expression Network