AMCG00008005


Basic Information

Item Value
gene id AMCG00008005
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39446070 ~ 39455574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008005
ATGGGCTCTGCTGTGTCACAACGAGAAGACGAGCAGAGATGCGAGAATATCCAGCGTCTGTTTGTTGTTCTTGCCCCAGCGCCCGGCCCGGCAGAGGACCGGTGTCCTGATGCGGGGAGTCTGCAGTCCCAGCACAGCCAGGTGTTTCTCCCCCGGTGGTTCGCTATCACCATGGTGATGGGGGGCCGACGACGAGGGATCGACACAGTGCCCCTGTCATGGTTGGTTGCCATGGCGCCGCTCGGTTCCGTTACCAGGGAGTCGAGGCCCCCCGGCCCCCCTAGAGCCGCCGGCAGGATTAACCTGTGTTCCCATGATGATACTGCTACTGGAGGAAGAGGGGCGTTTGTGGTGCGGCGTGCCAGGCAGGAGAGCCAGGCCGACTGGACGGGTCTGAAGAGGAGGCCTCGGCGCCAGGGGCCGTGCCCAAAGTTGGGGCATCTGAGCCCAAACCGACCGCGACCCCGACCCCGCACCGCCCAGCGGGAATCGGGAACAAAGAGTCGCCACAGCCGCCGCTGCCACCCGGGCATCAGCCGTGCGCCCGGCCGCCAGCTCTCCAGCACCGGGACGTCCACTCTCCACTACCGACTCCCCCCAACAAAGCAGGCGGCCCTCCCGGCGGATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008005 True 630 mRNA 0.66 4 39446070 39455574

Neighbor

gene id symbol gene type direction distance location
AMCG00008004 NA coding upstream 32295 39411690 ~ 39413775 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding upstream 68016 39376978 ~ 39378054 (+)
AMCG00007998 NA coding upstream 206442 39238048 ~ 39239628 (+)
AMCG00007991 NA coding upstream 333071 39104175 ~ 39112999 (+)
AMCG00007985 fam210b,LOC102797503 coding upstream 376764 39060647 ~ 39069306 (+)
AMCG00008003 NA coding downstream 1089 39456663 ~ 39463302 (+)
AMCG00008002 NA coding downstream 17242 39472816 ~ 39482333 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding downstream 39271 39494845 ~ 39503019 (+)
AMCG00008013 NA coding downstream 53885 39509459 ~ 39511872 (+)
AMCG00008012 NA coding downstream 56699 39512273 ~ 39512791 (+)
G27788 NA non-coding upstream 154849 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 179397 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 237777 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 386336 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 390443 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 149038 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 502413 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 596316 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 821840 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1295901 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 737155 38692739 ~ 38708915 (+)
G27551 NA other upstream 1009475 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1022915 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1275924 38168570 ~ 38170146 (+)
G27518 NA other upstream 1299220 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 47505 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 54837 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 84646 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 361453 39817027 ~ 39834952 (+)
G27974 NA other downstream 601058 40056632 ~ 40059386 (+)

Expression


Co-expression Network