AMCG00008008 (LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076)


Basic Information

Item Value
gene id AMCG00008008
gene name LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39494845 ~ 39503019 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008008
ACGGCGGGGGGCGCAGTGACTCACGCACCGGGAGCCACAGAGAGGCGGCGGGGGGCGGCGGGCCGGGCCGGGGTCGGGTTCTCTGCCGGGGCTCTGTGCCGTTCCGCAGCGCTGGGCGAGCATCCTTCAGCCAAAGACAAACCGGAGGAGAGGCTGCCAGCTGCGTGGGACCCTGGGACGGACGCCGTGTCCTCTCTCACTCATTCTCTCCTACTGTCCCTGCCATCTGGGGGGCAGCTCTGCAGTCTTCACAGTGGGAGTGAAGCCAGCTGACTGGGCTAGTGTCTGCTCTGGGTAGTGAAAACCGCCTCCCCCACAAACGCAGCTCCATCTCCGCTTTGCTGCTCCCCCAACACTCCCCCATCCACTCCACGCTCACGGACACGGGCCTTCCACAATACCTCCTATTGTTGCTTCTGTTTGGCTTTTTCTTCTCCCTGCCCGTGTGGACAAAGACCTACTGCAGGAAGCTCACCTCACAAGAAGAGCTGTGGGAGGAGAGACAAGTCTTCATTTGTTCTTtctgatgtttgttttagtttcttttaatcATCAGCAAGAGGAACGACCAGATTTCATCCAGGGAAAGCATCtagtatttataatatatatatatatatatatatatatttgtttgtttgtttgtttgtttttatttcaagcaAAATACCCCCAAACGTCCCTCCTTTCCAGTTTTGCACTTCAAGCCTGCACAGTGAGTGTGAAGAATAAGAGACACTGTTTCTGCCCCTGGCTCGGCTCCTGTTTTGCTCCTGGAGCAGTGCAAGCATGAGTGCTGAGAGCGGCTGGCCAAGCACTGGCTGTAGGTGCCACTCTGCTCCTATCGGGGCAACAGACCCTGGGGCTCTCAGCTCCTGTCCCAGGCCACAGTCAGGATACACACTATACTGACTCTCATCGTAAGTCTCTATTAACCCAGTGTGGCGTTTATCATGCTTCGTGCAGCAACATCAGAATGAATCCACAGGGAGAGGACTAAAGCGGAACAGAATCTATTAAAATagccacatttaaaataaataccagctgtgataagaaaacaaacagtttgCATATCCTTTTCAGGTACAACAATGCAGTCTTAAGACTTGAAATTTGGAAAAccaggaagaacaaaaaaaaaagaaacaaagtcaCAGATTTTGTTTCTAAGTCAGGTTAAGCTTCAGCTGAAAAGACCCACTTTGGGCTGGCttattgtctgtttgtgtgcgtgtttgtttcatgcgtgtgtgtgtgcttttgtgtggTTTAACTACAGGTTCCTGTCTGTGGAACAAACACAGTGTTCAACGGGCGTTTGTGCCAAGAAGTGGGCTGTTAACCAGCTTGTggcttttctgtgtgttttgcagtcTCTGTCACAACTGATCGCACTGTCTGTGCcgtacaaatacaatacatttaaacacaagtgTGCCAAactaaaaagagagaaagaaggaaaacagaaataataacaataaaaaaacaacaagaacatcTGAAAGAGAGACAGTAAGGAGCCCCGTGTCCAGCCCCCCACGTGTGTGCGTGAACGTGTGTCACCCTCCACATTTCCTGCTTTgtgcctccccccccccactcccaggATGAGTCTGAAGACGGACTCGGAGGGCGAGAGCTCCCAGCCACTCGTGTACaccctggaggagctggagtgCAAGATCTGCTACAACCGCTACGACTCCCGCACGCGCAAGCCCAAGGTGCTGAGCTGCCTGCACCGCGTCTGCGCCAAATGCCTGAAAAAAATGGTGGATGTGGGTGACTCCTCCCCCAGCATCATCAGCTGCCCCTTCTGCCGCCACGAGACGCAGGTTCCCGATGAGGAGATCTGGCTGCTGCAGGACGACAGCAATATCCTGGCCATCCTCACCTACCAGGACCGGGCACGCAAGAGCGGCTCCACCACCCCAGGCGAGGTGGTACTGACGCCCAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF182-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008008 True 1963 mRNA 0.52 2 39494845 39503019

Neighbor

gene id symbol gene type direction distance location
AMCG00008002 NA coding upstream 12512 39472816 ~ 39482333 (+)
AMCG00008003 NA coding upstream 31543 39456663 ~ 39463302 (+)
AMCG00008005 NA coding upstream 39271 39446070 ~ 39455574 (+)
AMCG00008004 NA coding upstream 81070 39411690 ~ 39413775 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding upstream 116791 39376978 ~ 39378054 (+)
AMCG00008013 NA coding downstream 6440 39509459 ~ 39511872 (+)
AMCG00008012 NA coding downstream 9254 39512273 ~ 39512791 (+)
AMCG00008009 NA coding downstream 47057 39550076 ~ 39555822 (+)
AMCG00008011 NA coding downstream 65424 39568443 ~ 39570932 (+)
AMCG00008022 NA coding downstream 281805 39784824 ~ 39790664 (+)
G27788 NA non-coding upstream 203624 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 228172 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 286552 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 435111 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 439218 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 101593 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 454968 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 548871 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 774395 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1248456 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 785930 38692739 ~ 38708915 (+)
G27551 NA other upstream 1058250 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1071690 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1324699 38168570 ~ 38170146 (+)
G27518 NA other upstream 1347995 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 60 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 7392 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 37201 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 314008 39817027 ~ 39834952 (+)
G27974 NA other downstream 553613 40056632 ~ 40059386 (+)

Expression


Co-expression Network