AMCG00008009


Basic Information

Item Value
gene id AMCG00008009
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39550076 ~ 39555822 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008009
ATGGCCTCCTGCAGAGCTGCCATCCTCCTGTTACTCCCCCTTGTCATCATGGCCACAGGAGAACCACCCAGCTGCAAGATACGCATCACCGCCAGGGGCCTTGAGATGTTGAGATACGAGACGCTGAAGTTTGTGGAGGAAGAGCTGGAGAACATCACCATCCCAGACCTGGAGGGGAAGGAGGGTCGCTTCCAGTACACCATCAAAGAtGTGAAGATCACAGAGCTGAACCTGACGTCCTCAGACCTGCGGTTCCAGCCCGACTATGGCCTGCTGTTCGAGGTGCACAACTCCTCCATCACCCTCAACTTCAAGAGAAAAATCCTCTACTGGTTCTTCCACGACGTGGGCTCCATCAACGCGTCAGCCGAGGGCGTGAACATCCACACCGCGCTGCAGCTGACCCGCGACGACGTCGGCCGCCTCAAGATCTCCAACATCTCCTGCGACGCCGCCGTGGGCAAAATGCGCGCCAAGTTCACCGGCACTCTGGGGAAGGTGTATGACTTCCTGGCGACCTTCATCACCACAGGAATGCGTTTCCTGTTGAACCAGCAGATCTGCCCAGTGCTGAACCATGCAGGGATGGTCCTGATGAATTCTTTACTGGACACAGTGCCCGTGCGCACACCAGTGGACAACCTTGTGGGGATTGACTACTCTCTCCTGAATGACCCCGTGGTGACCTCGAGCAACCTTGACATGAACTTCAGGGGGATGTTCTATGGCCTCCACAATGAGAACGACACCATTGTGAACTATGCACCGGAGCCAGTGGTCCGGGAGTTCGGCCGCATGGTGTACCTGGGTCTGTCTGAGTTCTTCTTTGACAGCGGCATGTATGCCTACTTCAAGGCAGACTCATTCAAGCTGCAGATTGCTGATGAACGGATGCCCAAAGATCTGGAGATGCTCCTGAGGACGACCTATTTCGGCACAATCATGATGATGAACCCGGCCCTGGTGGAGGCCCCGATCACACTGGACCTGGGGGTCACCGAGGCGCCCCGCTGCGTCATCAAGCCCTCGGGGGCGACCGTGTCTGTCACTGCCGTCGTCAGCGTCATGGTTCGACCTCCTGGCCAGCCACCCATCCAGCTCAGCAGCATGACCATGGAGTCCAAGCTCTCCAGCAAAGTATCCATGAAGGGCAAGAGACTGGCCATCCACATGGACCTGAGAAGCATTTGCCTTGGCTTTGGTGCATGTGatCTGATTCCTCTGCAGGGGCCACTGAAGACTCTGCTACAGCTGGTTATCATGCCTTTAATCAATGAGCGCACCAAGAAAGGTGTGCAGATCCCACTGCCAgaggggatggacttcacaGAGGAGGTGGTGGAGTACCACACGGGCTTCATAATCATCGGAGCCAACCTACACTTCAGCAAGGGTCTGAGAGAGGTCATCGAGAAGAATCGCTCCCCAGTCAAGACCAACAGCACCCTGGACTGA

Function

GO: NA

KEGG:

id description
K08761 PLTP; phospholipid transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008009 True 1455 mRNA 0.56 15 39550076 39555822

Neighbor

gene id symbol gene type direction distance location
AMCG00008012 NA coding upstream 37285 39512273 ~ 39512791 (+)
AMCG00008013 NA coding upstream 38204 39509459 ~ 39511872 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding upstream 47057 39494845 ~ 39503019 (+)
AMCG00008002 NA coding upstream 67743 39472816 ~ 39482333 (+)
AMCG00008003 NA coding upstream 86774 39456663 ~ 39463302 (+)
AMCG00008011 NA coding downstream 12621 39568443 ~ 39570932 (+)
AMCG00008022 NA coding downstream 229002 39784824 ~ 39790664 (+)
AMCG00008021 NA coding downstream 241513 39797335 ~ 39809029 (+)
AMCG00008023 NA coding downstream 287402 39843224 ~ 39848246 (+)
AMCG00008024 NA coding downstream 416741 39972563 ~ 39975851 (+)
G27788 NA non-coding upstream 258855 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 283403 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 341783 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 490342 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 494449 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 48790 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 402165 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 496068 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 721592 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1195653 40751475 ~ 40755976 (+)
AMCG00008010 NA other upstream 4469 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 45699 39503079 ~ 39504377 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 841161 38692739 ~ 38708915 (+)
G27551 NA other upstream 1113481 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1126921 38355929 ~ 38423155 (+)
AMCG00008020 NA other downstream 261205 39817027 ~ 39834952 (+)
G27974 NA other downstream 500810 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 685490 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 1108150 40663972 ~ 40721745 (+)
G28395 NA other downstream 2437037 41992859 ~ 41993377 (+)

Expression


Co-expression Network