AMCG00008010


Basic Information

Item Value
gene id AMCG00008010
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39540220 ~ 39545607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008010
GGCACGGATGGCTTTATTGCGACTGCAGGTAGATGTGTATTCAGTAAATAAGCAGCTTCTGCCGCCATCATATCCCCCAAAAAAACAGCCACTTCCAGAGCCGGAGAGCGGTACGCATGCGCCTGACGTGCCGCCCACCCCAGCGCTCCAGCCGCCCGAGCAGCGcggagaagaaggaggtgacGGCCAGGCTGCGCAACAAAGGGCGACAGCGGCGCCGCCGGAGCCAGGTCGGGGGAGCCGGGCGAAGAGAGGCAAAACACGGCCGGAATGGGGCTCGAATCGGGGCGAAAGCGGCACGGCGCGGAGGAGAATCGACGCCGGCAGCCGGGCGAGCCGTCAAAACGAGGAACCGAGCCGAGCCTGTGCCCGACCGCCCTCTTTTTCGAAAGCCGTACGATTTAGGCGCGCAGTTCAGTCGGGGGGGGAGCTGTAAACAAGATGGCGAGGGCGCCCGGGCTGGAGCCGCTGCGCTCTCCGCGGCTCGTATTGGCTGGTTTTACGGCGCGCCGACGAGGCAGGTGCAGTTGCGCCGGACAGGCGGGTACCCGGTGCGTTCCGCCGCCTGCCCGTGCCCTTGTTGCCCCGCGGAAGGGGGCAATTCCCTTACCTTTGAGAGGATTGCTGGGAATCCGGTATAGGCTTCGCTCAGCTCAATCCAGACCCGCCTCCGCCTCTCCCTCCCCACCGTCTCCGCCATCTTGTATTGGGGACCCGGCCCTGGACACTGCGCATGCGCTAGCTTCTTAGGGGCACGAATGGTTCAGTGTCATGACCGGTGGCCATGTTTGGTGTGGCACAGAGGTGTGAGATTTAGCAGGTGGAACGGGAGACATTTGGAGACCGTGCAATAAGCAGCGAtgtctgtatttgaaaatggatgaagATAACGCTGCTTACCCAGGGAGTTTGGTGATTGGCTGAGATGTAGAAGTGTCGATTAcgttcatgtttttattgcaaTAGTTTATCACCTTGATAAAGAGTGTCTTTAACACCTAAATGCACCGCCTGCAGGTTGATCTCGGCTCATAACCTGTTAAGTAATGGGACGAGAAGAGCCCATGAATGGATTTTACCGCAGCGGGACACGGCAGCGCGGCGCTAATTGGTTGGGGGACCGGTTCAAACCGCCGCTTCCCATTGgcttacatgaaaataaacagaccCCGTTCCTGAGTTCCCATTGGCTGCGAGGCTGCAGCACAACAAACGCCGTGATTGGCGCACGGCGCGCACAGGACTTGTTTATCTCAACGCTCATTGGCTGGGCAGGACACGGCAGGGAGGTAGGAGTGTGTGCCACTCCGCTGCAGCTGCTGTACCCGAGTCCTGCTCTTAGCCCAGGCCTGCTGGGTTGTGTCTGTCTGCTCCTAACAAAGCTCACCGATCAGCAGGACAGGGCCCTCCCTGCTGTACTGCTATTCTGGGAGGGTGGCAATAAATTAAGTGGCAGCTTCAAAGCTCTGGCCCGGGGGACTTCTGGTGGCAGCCAGCTCCCTCGTCTCAGCCTCGAG
>TU34891
GCGcggagaagaaggaggtgacGGCCAGGCTGCGCAACAAAGGGCGACAGCGGCGCCGCCGGAGCCAGGTCGGGGGAGCCGGGCGAAGAGAGGCAAAACACGGCCGGAATGGGGCTCGAATCGGGGCGAAAGCGGCACGGCGCGGAGGAGAATCGACGCCGGCAGCCGGGCGAGCCGTCAAAACGAGGAACCGAGCCGAGCCTGTGCCCGACCGCCCTCTTTTTCGAAAGCCGTACGATTTAGGCGCGCAGTTCAGTCGGGGGGGGAGCTGTAAACAAGATGGCGAGGGCGCCCGGGCTGGAGCCGCTGCGCTCTCCGCGGCTCGTATTGGCTGGTTTTACGGCGCGCCGACGAGGCAGGTGCAGTTGCGCCGGACAGGCGGGTACCCGGTGCGTTCCGCCGCCTGCCCGTGCCCTTGTTGCCCCGCGGAAGGGGGCAATTCCCTTACCTTTGAGAGGATTGCTGGGAATCCGGTATAGGCTTCGCTCAGCTCAATCCAGACCCGCCTCCGCCTCTCCCTCCCCACCGTCTCCGCCATCTTGTATTGGGGACCCGGCCCTGGACACTGCGCATGCGCTAGCTTCTTAGGGGCACGAATGGTTCAGTGTCATGACCGGTGGCCATGTTTGGTGTGGCACAGAGGTGTGAGATTTAGCAGGTGGAACGGGAGACATTTGGAGACCGTGCAATAAGCAGCGAtgtctgtatttgaaaatggatgaagATAACGCTGCTTACCCAGGGAGTTTGGTGATTGGCTGAGATGTAGAAGTGTCGATTAcgttcatgtttttattgcaaTAGTTTATCACCTTGATAAAGAGTGTCTTTAACACCTAAATGCACCGCCTGCAGGTTGATCTCGGCTCATAACCTGTTAAGTAATGGGACGAGAAGAGCCCATGGTGAGATCAGGAATTTGGTGACGGAGGAGAGTGACCTATTCACTGAAGCTGAGAGGGATTGTCTCGCCTCATTCATACCCAGGGCTCTGTAACAGGGATGCCCAGACCTGAAGGTGTATCGCATGGGTAACAACAGGGATGGGAGCAGGACTCCGGTTGCACAGCGATTTGACCCATTTCAGGTTTTCCCAGCTTGATGGGTATCGAGTTGTGGGATGATTTTCCACTGGGACTGTTCAATTCTGAAATGATTTGCTTTTCTCACATCGTTGGGTATCATTTGTGCAAGAGCTGGACACTGCCTGAAATAAGGAAACAGTCAATGCAGTTGGGGAGCCTTATTCCTGGACTGCTTGAGTATGCAAGTACGTCTGACTTGTGGTTTGCTGTTaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008010 True 1517 mRNA 0.59 4 39540220 39545607
TU34891 False 1299 lncRNA 0.56 2 39540382 39541917

Neighbor

gene id symbol gene type direction distance location
AMCG00008012 NA coding upstream 27429 39512273 ~ 39512791 (+)
AMCG00008013 NA coding upstream 28348 39509459 ~ 39511872 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding upstream 37201 39494845 ~ 39503019 (+)
AMCG00008002 NA coding upstream 57887 39472816 ~ 39482333 (+)
AMCG00008003 NA coding upstream 76918 39456663 ~ 39463302 (+)
AMCG00008009 NA coding downstream 4469 39550076 ~ 39555822 (+)
AMCG00008011 NA coding downstream 22836 39568443 ~ 39570932 (+)
AMCG00008022 NA coding downstream 239217 39784824 ~ 39790664 (+)
AMCG00008021 NA coding downstream 251728 39797335 ~ 39809029 (+)
AMCG00008023 NA coding downstream 297617 39843224 ~ 39848246 (+)
G27788 NA non-coding upstream 248999 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 273547 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 331927 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 480486 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 484593 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 59005 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 412380 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 506283 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 731807 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1205868 40751475 ~ 40755976 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 35843 39503079 ~ 39504377 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 831305 38692739 ~ 38708915 (+)
G27551 NA other upstream 1103625 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1117065 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1370074 38168570 ~ 38170146 (+)
AMCG00008020 NA other downstream 271420 39817027 ~ 39834952 (+)
G27974 NA other downstream 511025 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 695705 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 1118365 40663972 ~ 40721745 (+)
G28395 NA other downstream 2447252 41992859 ~ 41993377 (+)

Expression


Co-expression Network