AMCG00008011


Basic Information

Item Value
gene id AMCG00008011
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39568443 ~ 39570932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008011
CCCACAGTCAGTCAAAAATAGCCCCGCTCTCTCGCACAGCACAGCATAGCACCAGAATCTTCCTTCTCCAGGGCCTGGATCCGAAACATACTTAGGACAGCCTCAGGGCTTCGATCACTGCTTTGCTTACTTTCTGCACCAGCCTTTCCTGTCCTGCCGCCTTGTTCTGGAAGCCTGGAaagcttattttttatatatatttatttgaaagaggAAGGGAGGGCATCGGTTGGAGGTAATGGCAACCACCATGGCAGGCCAGTTCATGGAGTTCCACCCAATCCACGGCAGCAACATCAGGCTGGACCTCTCGGGGACGCGCGCCACACGGGTGGAGAGCTTCGCCGACGGGATCTGCTTCAGCAAGTACCCGCTGGCTCCCGGGGAAATCTTTCTGGTGGAGATCGAGGAAAAGGAGCTGGGCTGGTGCGGACACCTGCGCGTGGGACTGACGGCCCAAGACCCCTGCAGCCTGGCAGCCGTGCCCGAGTACTCCCTGCCGGACCTGGCTGCCCTGGGCGACAGCTGGATATTCGCCATCACACGGAACCACAACAAGGTCCTGttagaagaggaggagggggcagcGGAGGGCAGGGGACATGTACTAGGGAGAGGAGGTGAAGAAAGAGGGGgtgagggagaaggaggaggaggagaggcaCAAGACGTGGTCTACAAGAACACCAAGACATTCTTCACTGACACCCATCTGCACATTGAGGGTGTGCGCATCCCCAGGGACAAACTCGTCGGCCGTAGCCGCCCGGGACGCTTCAGCCACATCCTGGACGACCTGTATAAGACCAACGCTCTGCCCCCCACTGCCCGCCGCAGCCGCATAGGCGTGCTGTTTGTGTCCAAGCCACACGGTACGGCCGACATGCACATTGTCATCAACGGCGAGGACATGGGCCCCAGTGCCAGGGGCATCCCAACCCAGCTGCCCCTCTACGCCGTCGTGGACGTCTTCGCTGCCACCAAGAGCGTGCGAGTTGTTCAGGTGGAGTACGGCTTCCCCTCTCTGCAGACGCTGTGTCGGATGACCATCCAGAAGCACATTGTCCACAGGATGGCCCTGGAATGGCTGGAGCTGCCAGAACTCCTCAAGCACTACTGCAAGTATGAGTGACTGCTGGGGAGTCGCACGGAGGGGCCGAGGGGCACAGCTTTGCATTGTGGACAGGGTGCAGAAGGAGCTCTTTACCATTCCACTACAGGGAACGGCAGTCCAGCCAACCACCTGCACCTGATCTCTTCTTCAGTCCCTGGGAGTGGGGTCTGGCTTGACTGTTCCTGGAATGCAAGCTTGTCTTTGCATGAGCACTGAAAACCTCATGGCAAAGGAGTCTATCCGATTCACAGAGCACTCCCGAGGTGAATGTGGGTCTGGATCAAAAATAGCAATGCTCCCCCAGGACACCACAATCAAGATTTATACTGAACACTCTGATGACCGGAGAAAACTGGTAAAAAGAGTCAGTGCCTGGATGCTAATATGAATCTACTGCCATTGCTTTTCATGTGGCTTTCGgtgtaaattaattttcttttcagggtgaaaactgaaacaaggcgctttcattttaaaatccaaatgatgttttattttggatAAAGACTAATGCTAAAAATATAGCAGTTGCAGGTGACTTCAGTGTTAGTTTAAACAAGCTGTTTGTAATTGCCAACTTCATTGGAGTGAATTGAACTGGATTCAAAAGTGGAACTACCTTTTTAGGTGCCAATATAATTACATCTTTAAATCACTATATCACTTCTACTTGAATGTGTATGTCTGAAAATGAGTGACGATGATAAAGATAATGAtcagtttgtttaattgattcTTCACATATGCTACAGTTTGGCCATACACCAAtgagttgaaaaaaaaatgtatttcatttatagaaaataaaatctgtatacTAGTATTTATTTGCTTCTGTGCGTTCTTCAATAGTTTCAATTCAGAATGCTATTAATGatgtatgcaaaaatatattattaatttggcaGACATTTATTCAGGATGATGACATTTCTGTTCATACCTATCTCTTAATGCTGTAAGTTGCACTAACACCCAAATAACATAATTCCTAAATAATGAATGGTCAAAACAATCATTGATTTATGTCAGTGtacttgcaaattaaaa

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K16782 NEURL2; neuralized-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008011 True 2164 mRNA 0.49 2 39568443 39570932

Neighbor

gene id symbol gene type direction distance location
AMCG00008009 NA coding upstream 12621 39550076 ~ 39555822 (+)
AMCG00008012 NA coding upstream 55652 39512273 ~ 39512791 (+)
AMCG00008013 NA coding upstream 56571 39509459 ~ 39511872 (+)
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding upstream 65424 39494845 ~ 39503019 (+)
AMCG00008002 NA coding upstream 86110 39472816 ~ 39482333 (+)
AMCG00008022 NA coding downstream 213892 39784824 ~ 39790664 (+)
AMCG00008021 NA coding downstream 226403 39797335 ~ 39809029 (+)
AMCG00008023 NA coding downstream 272292 39843224 ~ 39848246 (+)
AMCG00008024 NA coding downstream 401631 39972563 ~ 39975851 (+)
AMCG00008027 NA coding downstream 491789 40062721 ~ 40074110 (+)
G27788 NA non-coding upstream 277222 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 301770 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 360150 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 508709 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 512816 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 33680 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 387055 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 480958 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 706482 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1180543 40751475 ~ 40755976 (+)
AMCG00008010 NA other upstream 22836 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 64066 39503079 ~ 39504377 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 859528 38692739 ~ 38708915 (+)
G27551 NA other upstream 1131848 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1145288 38355929 ~ 38423155 (+)
AMCG00008020 NA other downstream 246095 39817027 ~ 39834952 (+)
G27974 NA other downstream 485700 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 670380 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 1093040 40663972 ~ 40721745 (+)
G28395 NA other downstream 2421927 41992859 ~ 41993377 (+)

Expression


Co-expression Network