AMCG00008015 (tbc1d20)


Basic Information

Item Value
gene id AMCG00008015
gene name tbc1d20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39482586 ~ 39489763 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008015
CGAAGTTTGGGGCGGCCGGCGTCAGAGGTCGCTCCGGCGTGACGCGATGACGTAGCGCCTGTAGTGAATGTTTTTGACCGGCGGCGACGTCGGCCTgtccagggagagagagaccgagagggGATGTCAGCGTCGCACTGCTGTTCATACTGACAGGCGAGCAGTTGGCCTGCGGGACAGCGTGGGTTCAGATGTAGTGTCGCCATTATTTGGTTTCCTAATGTCAGTGCAAAACGCAGGCGGCGGGGAGAGAGTTTCGCGACGCGGCCCGCGATGAGCCGAGCCACAGGAAGATGGATGTGAAAAAAGCCCCCGGTGTCGGCGCCTCTTCCCCCTTAAATGGGATCGGCAGGCAAGGAGAGAGTGGCAACACCGCTGGGTGCACTGTGCCAGAGCCGCAGCCCTGCTGCTGTGGAAATGTCGCTGTGCCACACGTCCCGATAGCGGGGGCCCTGGCCGATTTTGATCCGAAGCGGAAGAGGAAGGTGCTGGAGATCTCCCAGGCGCTGAGCGCGAGTCCGGTGGACGTGGCCGTGCTGCGCAGGATGGCCATCGGCGAGGGGGGGCTGCTGACGGACGAGATCCGCTGCAAAGTCTGGCCCAAACTGCTGAACGTGCAGACCGACCGGCTGCCCGAGAAGCCAGGTGAGGCGCTGCGTGAAAACAACAAGGATTACCATCAGGTCCTGCTGGATGTGCGGCGCTCGCTGCGGAGGTTCCCCCCCGAGCTGGCGCTGACCTCCCCCCCGCCCGTGCTGTGCGCAGGGATGCCGGACGAGCAGCGTGAGGGGCTGCAGGAGGAGCTCATCAACATCATCCTGCAGGTGCTGCACAACAACCCGCAGCTGCACTACTACCAGGGCTACCATGACATCGTGGTCACCTTCCTGCTGGTTCTGGGAGAGCAGCTGGCCACCGCACTGGTGGAGAAGCTCTCCACCCACCATCTCAGGGATTTCATGGACCCCACCAtggacaacacaaaacacattctgaacTATCTGATGCCCATCATAGAGAGAGTCAATCCAGAGGTGCACGATTTCATGCAGAGGGCAGAGGTGGGCACCATTTTCGCCCTCAGCTGGCTCATCACCTGGTTTGGCCATGTGCTGTCAGACTTCCGCCATGTGGTGCGGTTGTACGATTTCTTCCTGGCCTGCCACCCCCTGATGCCCATCTACTTTGCTGCTGTGATCGTGCTGCACCGCGAGGAGGAGGTGCTGGAGTGCGAGTGTGACATGGCCTCGGTGCACCACCTCCTGTCCCAGATCCCGCAGGACCTGCCGTACGAGCTGCTGATCAGCCGTGCCGGGGACCTGTTCGTGCAGTTCCCGCCCTCGGAGCTTGCCCGAGAGGCCACGcagcagcacagccagcaGACAGCCGCCTCCACGTTCAAGGACTTCGAGCTGGTCTCGGCGCAGCAACGGCCCGACGCGGTGCTCCGGAGGCGGCGGCGGGAGCAGGCGAGGGCGGCGGCGACGGCGGTGGTGAAGAGCAACGCCGTGGCGGTCCAGCCGCGGGCCAAGCGCTTCGTCAGGCTGGCTGTGATGGGACTGACCGTGGCTCTAGGGGCGGCCGCGCTGGCTGTCGTGAACACTGCGCTGGAGTGGGCGCCCAAAATCGACCTGCAGCTTTTCCCCTGAGCCCTGGAAAGCACCATAGAGGAGAGAAgggtggaaaaaatgaaaaggaaggatgttattttttttttcttttgtggctTAGACACTTTAAATAGAAAAAGTACCAGGTTTCTTGGGGGAAGATGGaaacctaaatatatatattttcttttcggcggtaaaaacaaatcttgacCCCaggacattttttcttttttttttttttttatgtttaattaagaaaataatgatcaTGTCCACCACACAGATCAATTAAAGATGTGGTGTGCgggttttaaatataaaaagctgGTGGCTCTCTTTAAGATCTGGCAATTGGTTGAAGGAGCTGCCAGCAGGATAAGGGGCCCTGCTGGCTATAGAAGAGCCCATCCTCTTAGTCTAAATGGGGGCCGGGGGCGTGCTCTGCAGTAGCTATCCTGTACAGAGGATTAATTGCCAGTTTGCGCTATGTGGTTCGGGCACGGGGGGGCGTGTCGGTCCCAGTGGCTCAGACCCGGGTTCTGCCTGACCGCGTGACGGTATCAGGACAGAGCACAGCTGGACTCTCTCCTCTACTGAAATGAAGTTCTTCCGTCTGCACTGACAGCGCCTGCCTCTCCTGGGTCCCTGTGCCTTTCCGGAGAAGTGTGGATTTTGCACTCTGGAGCAGCAGTGATATTTAGCCAAGCAAACTAATGCCAACTACATTATTGAACTCCTATTATCTCCCTGAGCTTTCTACACACTGAGAccaaatgaatacatgaataaagtaaatatttgtatatttagcCAATAAGGTTTATTTTGCagaaaggtttttgttttattttcatttgctctTTGCACTcatccaacccccccaccaccaaaaacacctccctctccctcggtctcatgcattattaaagttcgttttatgtttttttttttttaattgcacttaTTTTGGTTATATAATGATTTCAAAACAGAGCCAAGCATTAAGATATAGATCGTTCCTTTTACACTAATGGCCTGTGTTTCCACAGCACTTCTGCCTTTTTGAGTAAGTGGTCTCAGGGCACTTAAGGGACTTTCCATTGCCCCCCCCCACGCCCATCACAGATTCTCAGCCCTCAGTCCAGTACAGTCGCTCTCCTGGGCTTGCTGGGCTGCGTTCTGCACCGGACGCATTGCCCCCTGCTGCTGCAAGTGCACCATGggtaaagtaaaacaaacccGTTTTTGTTTCGGTTCAACAGATTCTCCCTACGGTTACATTGAAGGCCATGGCGATCTGCTAATTTCGCTGGCCTGGTTATGACTGACATAAATTATACCATGTAGGTGTATGTATATTATGAAAAGGGTAGGTGCTCGGTGTACAGTAGAGGTCGAGTTGAGTCACTATGTCCGTGATTCCAAAAGGAGTCTATGATGTAAACGTGGattgtgtttctcatttctccgtgtgtgtgtgctgttacAACAGAAACTAAGACTGGGCAGAGGATTAATCTACCTCTAAAAGAGTATTTcagaaaaagagacaaaaaaagtGTCAACCTTTTCACAGCACTAACCTACTAAAAATAACTGATTCTCTGGATCATGGAGGCCGTGTCATGGCAGGGCAGTGTCTGAAACCAGCAGGTGGCCAATTCTTCGAGGCTACTTCATACTTGACCTTTGGTTTGGACTGCAGCGGGTTGTGCTGCAGGGTTTACCCCAAGACAGCCGACGCTACACATCCGCCATATCCTTCACCAGGCGTGGCCCTTGGCAGTATTTCCTATGGAAGTTAGTTTAGGTTCTCCTCTGGTTCAGTGATGTTTAACAGTGGATTCATATCAATTTACTACTACAATTATAGAGCACGTACTGTTAACACTCACTTACTCAAGGCTGCTTTTTGCTTGGCAGTGATTTTTACAGGGAAAAAGAAAACGATTTTAAATAGtacttccacacacacacacacacacacacacactttctctttctctctctctctcacacacactagAAAAAAGTTGTTTTACGGTGTCCCAGACTGACACTCCCGTGTCTCTGAACCGTGATTTGTGACTAATCAAGGGACCTTTGTAAATCTAATCTGTCATCTTCTCTTTCTGATATTTTGCTCTTCCgtgaaaatcacattaaaaaccaCTAAAATAAACCGTACAGAAAGGGgcttattttctttgtacatgGATTACGTCACACCCAGAGCCAGCATTTCCAGGCTGGGCTGGGGGGTGTGGGTGGGGCAGATCAGTTCTATGAAGAAAC

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

NR:

description
PREDICTED: TBC1 domain family member 20 isoform X2

GO:      GO:0005097,GO:0032851

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008015 True 3908 mRNA 0.52 9 39482586 39489763

Neighbor

gene id symbol gene type direction distance location
AMCG00008006 LOC106565397,LOC106583327 coding downstream 10194 39465571 ~ 39472392 (-)
AMCG00008000 pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380 coding downstream 175807 39300644 ~ 39306779 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding downstream 192588 39269967 ~ 39289998 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding downstream 224356 39240447 ~ 39258230 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding downstream 246104 39221082 ~ 39236482 (-)
AMCG00008018 ube2c,LOC107744406 coding upstream 23703 39513466 ~ 39517267 (-)
AMCG00008017 LOC107744395,LOC107587627 coding upstream 28681 39518444 ~ 39525326 (-)
AMCG00008014 pcif1 coding upstream 38626 39528389 ~ 39541946 (-)
AMCG00008016 NA coding upstream 67813 39557576 ~ 39566554 (-)
AMCG00008019 NA coding upstream 102569 39592332 ~ 39628102 (-)
G27833 NA non-coding downstream 26728 39455040 ~ 39455858 (-)
G27686 NA non-coding downstream 559898 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 626809 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 702834 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 715018 38749127 ~ 38767568 (-)
G27904 NA non-coding upstream 274167 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 300783 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 352568 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 787400 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 1138014 40627777 ~ 40632764 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 390691 39088557 ~ 39091895 (-)
G27720 NA other downstream 426907 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 432989 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 544923 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 574775 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 10558 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 778509 40268272 ~ 40288574 (-)
G28202 NA other upstream 1526396 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1709726 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1916028 41405791 ~ 41412224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014405 zgc:63863 coding NC_007130.7 CM002903.2 1329539 ~ 1363759 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_08144020_08149228 TBC1D20 coding CI01000030 null 8143888 ~ 8149228 (-)