AMCG00008016


Basic Information

Item Value
gene id AMCG00008016
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39557576 ~ 39566554 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008016
ttttaatgcattaattatggATTACTGATTCAATTTGCTGGCATTGTGGTGGGGGAGCTCTTTTCTGAGGCTGTTACTTCAGAAAGGACACCAAACTACTTGTGAGAGCATACAAGCAATGCTCCACCTTCACAGTGCTCTGCTGATGTCTCGGTTGGCGCTGTGCCTGCTGTTGGGAGTGCTGAGGGTCCAGGGAGCCCCCGATGCCGATGAGATCAAATCCCTCCCTGGCCTCGACAAACAGCCCAGCTTCAGGCAGTACTCTGGGTACCTGAATGTGTCCGGAAACAAACACCTGCACTACTGGTTTGTGGAGTCTCAGAAGGACCCAGCCAATAGCCCAGTGGTCCTGTGGCTGAACGGGGGTCCCGGCTGCAGCTCCCTGGACGGGCTGCTCACTGAACACGGCCCCTTCCTGGTTCAGGATGATGGCAGCTCACTGAAGTACAACCCCTACTCCTGGAACATGGTGTCCATGAATAACTACCTGGCCCTGAAGGTCTTTTTCCAGCTCTTCCCAGAGTACAGCAAGAACGAGCTCTACCTCACAGGGGAGAGCTACGGGGGCATCTACATCCCCACACTGGCCGAGAGGGTGATGGAGGACCCCAGCCTCAACCTGAAGGGAATGGCGGTCGGGAATGGGATGTCCAGCTATGAGATGAATGACAACTCGCTGGTCTATTTCGCTTACTATCATGGTCTCATTGGCTCACAGCTGTGGATGGGGCTACAGCAGTACTGCTGCTCAAAGGGGATGTGCAACTTTTACAACAACCAGAACCCGAACTGCACCACCAACGTGGCAGAGGTGCAGAAGATTGTCTTCAGCTCCGGCCTGAACATGTACAACCTGTATGCCCCCTGCGCTGGAGGCGTGCCCCAGAAAGTCAGcTACAAGAAAGGTCACCTGGTTGTCCATGACTTGGGGAACAGCTTCATTCTCCATCCCTGGAACGTCATGTGGAATGAGAAACTCCGTGGTCTGGCCTCTCTGCACAAATCTGTGACCATGGACCCTCCCTGCACCAACTCCACCCCCTCCTATACCTACCTGAACGATCACTATGTCCGCACGGCGCTGCACATCCCCCCCGAGGTCCCCAACTGGGAGATCTGCAGTGCGGTGGTGAACCTCAACTACAACCGTCTCTACATGGACGTGACGAAGCAGTACCTGAAGGTGCTGGGAGCTCTGAAGTACCGTGTACTGGTGTACAATGGAGATGTGGACATGGCCTGTAACTTCATGGGGGATGAGTGGTttgtggagtctcttcagcaACAAGTGCAGGTAAACCGCAGGCCCTGGCTGTACGAGAGCGATGAGGGCCAGCAAGTGGGCGGCTTTGTCAAGGAGTTCTCCAACCTGGCCTTCCTCACCATCAAGGGCTCAGGTCACATGGTCCCGACTGACAAGCCAATCGCTGCCTTCCAGATGTTCAGCCGCTTCCTGCTGAAGAAGCCTTACTGAAGCCGAGCAGGACGGACACCTGCCCCTGCCCACCCCAACCCCTGCCCCTCTCATTCCTGAATAACAATGCATCTCAGGGCCGAGCGGGGCTGACCTCCCCATggcccacacacatacacacacacatgcgcactcATCTTCCTGCTGCGAGTGCGGATCAGAGCCCATTCCATGTcgtctctcttctctctgcGATCAGCTGCGACTCTCCTGTTCATTCCATTCACACTGTGCAGGACCTTCGGTGGCTCTAGCTAATCTGCACTCGGGAGGGTGCAGAACGCAGATTTGCACGCATTTGCCGTCCCCCCACACTGATCTGCTTCTAAGTTAAAAGTGTTTGTGCCTGTTAATTGTTGTGCTCTTGTTATTCACCTGTGTCAGGTCAGCTTTCCAAACAAATTAAACGGGTCGCCGTCTCCTCTCTGCTCAGGGCGTCCGGTCCGGGACCTCCCTGGAACCTGCTGTAATTAAGACTGGCGTTTCTCTGTGCCTGTCTGAGATGCACTGTCCGTGTCATAGTGGGGCACCTGCATTCGGAGGAGGTGTGCTGTTGTGATTCGCTGTGTTAGACACGAGATCTCAGCACAGTTTTTAAATCCACTCCCAGCCTTGCTAATCCAAGATCTCAGCGCAGCCTCTGATATCAAGCATTTAACCACTTATGGGTACCAGATTGATTGTATGATATATGAAATCAAGTACTTTCTGCCTGAGAGGTGTGAAGGGGTTCAAAacagagtatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K13289 CTSA, CPY; cathepsin A (carboxypeptidase C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008016 True 2242 mRNA 0.53 14 39557576 39566554

Neighbor

gene id symbol gene type direction distance location
AMCG00008014 pcif1 coding downstream 15630 39528389 ~ 39541946 (-)
AMCG00008017 LOC107744395,LOC107587627 coding downstream 32250 39518444 ~ 39525326 (-)
AMCG00008018 ube2c,LOC107744406 coding downstream 40309 39513466 ~ 39517267 (-)
AMCG00008015 tbc1d20 coding downstream 67813 39482586 ~ 39489763 (-)
AMCG00008006 LOC106565397,LOC106583327 coding downstream 85184 39465571 ~ 39472392 (-)
AMCG00008019 NA coding upstream 25778 39592332 ~ 39628102 (-)
AMCG00008025 tfap2c,LOC106565286 coding upstream 362977 39929531 ~ 39945352 (-)
AMCG00008026 rtfdc1,LOC106565284 coding upstream 415058 39981612 ~ 39984433 (-)
AMCG00008029 LOC106565282 coding upstream 420374 39986928 ~ 40008602 (-)
AMCG00008028 LOC108233014,LOC100703573,LOC101171829 coding upstream 484475 40051029 ~ 40061973 (-)
G27833 NA non-coding downstream 101718 39455040 ~ 39455858 (-)
G27686 NA non-coding downstream 634888 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 701799 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 777824 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 790008 38749127 ~ 38767568 (-)
G27904 NA non-coding upstream 197376 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 223992 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 275777 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 710609 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 1061223 40627777 ~ 40632764 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 52984 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 465681 39088557 ~ 39091895 (-)
G27720 NA other downstream 501897 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 507979 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 619913 38924581 ~ 38937663 (-)
AMCG00008042 NA other upstream 701718 40268272 ~ 40288574 (-)
G28202 NA other upstream 1449605 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1632935 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1839237 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 2280379 41846933 ~ 41849954 (-)

Expression


Co-expression Network