AMCG00008018 (ube2c,LOC107744406)


Basic Information

Item Value
gene id AMCG00008018
gene name ube2c,LOC107744406
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39513466 ~ 39517267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008018
CTGCTGATTGGCCCGCGGGAGGCCAGTGTGGGCGGCGATTGGTTAAACAGGACGATCTGTGGGCGGTGATTGGCTGAATGGAAACGGATTTCAAAAAATTTGAACTGAGGGGCGGGATAAAGGTTGAAATCGGGCCTTCGGCCGGAATCTGAATGACAGAATAACACAGGCGAGCCGGCGAGCGCAGCGCAGCCCGCAACACTGGTTTTGGTTTGTTAGTCTCCTTTCCAACCGCCAGACGACCGTtgatttttttatctttgtggAAGAGTTTACTAGAAACCAAACCCAACCCAAATCATGGCTTCTCAGAATATGGACCCGGCAGCTGCGACCCCCGCCGCCGCTCTGAAAGGCAGCGAGTCCGGCGGCAGCGCAGCCAAGGGCTCGGTGTCCAAACGATTGCAACAGGAGTTGATGACCCTAATGATGTCTGGGGACAAGGGCATCTCTGCTTTCCCAGAGTCGGACAATCTCTTTAAGTGGATCGGCACCATAGACGGCGCTCAGGGAACGGTGTATGAAGGGCTGAGGTACAAGCTCTCCATGGAGTTCCCCAGCGGCTACCCCTACCAGGCGCCCCGTGTGAAGTTCATCACGCCCTGCTACCACCCCAATGTGGACGAGCAGGGCTTCATCTGCCTGGACATCCTGAAGGAGAAGTGGTCGGCGCTGTACGACGTGCGCTCCATACTGCTGTCTATCCAGAGTCTGCTAGGAGAACCCAATAACGAGAGCCCCATGAACACCGGCGCAGCCGAGCTGTGGGCAAACCAAGAAGCTTACAAGACCCATTTGCACGCGACCTACAAGAACTGACCCCTGGGATTCGCCCTGCCCCGTCTTCTGTGCGTCTCATTTTTCAATGTCTTTTACTGTCTCCACTTTCTcacaattatgtaaattatcAGTGTCgatttaatatactttttgtctttatttttattaacttaTGTGAATAAAGAGATTTCTTGTAAAGTGCATTTAAGCTGTGCTCATTATATAGATTCTGTTCATGGAGAATCGTGCACTTAGCAGAATGGTGTGgttaattgaaatgcattattacCAGAGCCCTCTGTGTGCATGTGGTTTTGGACATGGAATAAATTGAGTTGCCTTTGTTACCTTTTGTACATGAGTGCTTCAGTTCTCTAAACTAAACTGGACCTTACTGGTGTGACGTGGGCAGCAGCATCTGCACTGAAGGGTTGGATGGGGGGGGTCTCCAACTCAATTCCTGTGTATGTGTTCATAGGTGTTTAAACTtatctagctaattaaac

Function

symbol description
ube2c Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 C-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06688 UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008018 True 1286 mRNA 0.50 7 39513466 39517267

Neighbor

gene id symbol gene type direction distance location
AMCG00008015 tbc1d20 coding downstream 23703 39482586 ~ 39489763 (-)
AMCG00008006 LOC106565397,LOC106583327 coding downstream 41074 39465571 ~ 39472392 (-)
AMCG00008000 pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380 coding downstream 206687 39300644 ~ 39306779 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding downstream 223468 39269967 ~ 39289998 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding downstream 255236 39240447 ~ 39258230 (-)
AMCG00008017 LOC107744395,LOC107587627 coding upstream 1177 39518444 ~ 39525326 (-)
AMCG00008014 pcif1 coding upstream 11122 39528389 ~ 39541946 (-)
AMCG00008016 NA coding upstream 40309 39557576 ~ 39566554 (-)
AMCG00008019 NA coding upstream 75065 39592332 ~ 39628102 (-)
AMCG00008025 tfap2c,LOC106565286 coding upstream 412264 39929531 ~ 39945352 (-)
G27833 NA non-coding downstream 57608 39455040 ~ 39455858 (-)
G27686 NA non-coding downstream 590778 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 657689 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 733714 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 745898 38749127 ~ 38767568 (-)
G27904 NA non-coding upstream 246663 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 273279 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 325064 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 759896 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 1110510 40627777 ~ 40632764 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 8874 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 421571 39088557 ~ 39091895 (-)
G27720 NA other downstream 457787 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 463869 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 575803 38924581 ~ 38937663 (-)
AMCG00008042 NA other upstream 751005 40268272 ~ 40288574 (-)
G28202 NA other upstream 1498892 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1682222 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1888524 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 2329666 41846933 ~ 41849954 (-)

Expression


Co-expression Network