AMCG00008019


Basic Information

Item Value
gene id AMCG00008019
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39592332 ~ 39628102 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008019
ATGGAGGTCACAGATCAGACCTCCACAATACCAGCTCCCCGAGGGCAGGCTGGAGGGGTCCTGGGGAAAGAAAAGAGCCAGCTAGGCCATGGCTTGCTCTTCGGCGATGGCAACCCCAAGGAGAGTAGCCCTTTCATCAACAGCAGTGACGTGGAGAAGAACCAGCAGTACGATGGCAAGAACATGGCTCTGTTTGAGgaaGAGATGGACACCAGCCCCATGGTCTCCTCCTTGCTCAGCAGTCTGGCCAACTACTCCAACCTCCCACAGGGAAGCAAGGAGCACGAGGAGGCCGAGAACAACGAGGAGCAACGCAAGAAGCCTGTCAAGGCTCCACGGATGGGCACGTTCATGGGCGTTTACCTGCCCTGCCTGCAGAACATCTTCGGTGTGATCCTTTTCCTGCGACTGACCTGGGTGGTGGGCGCCGGTGGGGTGCTGGAGTCCTTCATCATCGTCTTCATGTGCTGCGCCTGCaCCATGCTGACCGCCATCTCGATGAGTGCCATCGCTACCAATGGAGTGGTGCCAGCGGGGGGATCTTACTACATGATCTCACGATCCCTGGGGCCAGAGTTTGGGGGCGCCGTGGGACTGTGTTTCTACCTAGGGACCACTTTCGCTGGGGCCATGTACATCCTGGGGTGTATCGAGATCCTGCTGACCTACATTGTCCCCCAGGCTGCTATATTTAAGATGGAGGGTCTGGATGGGACAGATGCAGAGGCTGCCCTGCTCAACAACATGCGTGTGTATGGGACATGCGTCCTATCCCTCATGGCGTTGGTGGTGTTTGTGGGGGTGAAGTATGTCAACAAGCTGGCCCTGCTCTTCCTGGCCTGCGTCATCCTCTCCATCATCGCTGTCTATGCCGGCGTCATCAAGACCGCCTTTGACCCACCTGACTTCCCGGTCTGCATCCTGGGCAACCGCACCCTAATCTGGAAAGGCTTTGACTTGTGCGCCAAGGTGGTCGAGCGAGACAACGGCACCTTCACCACCAAGTTGTGGCGCATGTTCTGCGACTCAGACCAGCTCAACGCCACCTGTGACGAGTACTTTGTCAACAACAATGTCACCGAAATCCAGGGCATCCCCGGGGTGGCCAGCGGCATCCTGGCCGTCAGCGATGACTCCCCAGTCACCAGTAGCAACCGATATGTCTTGGCTGACATGACCAGCTTCTTCACACTGTTGGTCGGGATCTACTTCCCCTCTGTAACAGGAATCATGGCCGGATCCAATCGCTCCGGGGATCTGCGCGATGCCCAGAAGTCCATCCCTATCGGCACCATAATGGCCATCTCTACCACCTCCTTTGTGTGTATCCTTTCCCTGCACTGCCTGTCCACTCTGGTATTCGGTCACGGCAAGGCAAACGGGGAGCCCACCTGGGCGCTGCTCCTGACCGCCTGCATCTGCGAGATCGGCATCCTGATCGCCTCTCTGGACGCCGTCGCCCCCATCCTGTCTATGTTCTTCCTGATGTGCTACATGTTTGTCAACCTGGCCTGCGCCTTGCAGACTCTCCTCCGCACTCCCAACTGGAGACCTCGCTTCAAATTCTACCACTGGGCCCTGTCCTTCCTGGGCATGAGCTTGTGTCTGTCGCTGATGTTCATCTGCTCCTGGTACTATGCCATCGTTGCCATGGTGATCGCCAGCTGCATCTACAAGTACATTGAGTACCGCGGGGCAGAGAAGGAGTGGGGTGATGGGATCCGTGGCCTGTCCCTCAGCGCGGCTCGCTACGCACTCATGCGACTGGAAGAAGGGCCCCCCCACACCAAGAACTGGAGGCCCCAGCTGCTGGTGGTAGTGAATGTGGATCAGGACCAGAACGTGGAGCACCCCCAGCTCCTGTCCCTGACCAACCAGCTGAAAGCAGGCAAAGGACTGACCATCGTGGGCACAGCACTCGTGGGCACCTTCCTGGAAAACCACCCCCAGGCCCAGCGCGCAGAGCAGGcaggggggctgggggggctgcAGCATAACACGGTGCTCGTCAGCTGGCCGCGCAACTGGAAACAGGCCGAGGATCACCAGACCTGGAGGAATTTCATTGAGCTGGTCCGTGAGACCACAGCTGGTCACCTGGCCCTGCTGGTGCCCAAGAACATCACCGCCTATCCCTCGAACCAGGAGCGCTTCACTGAGGGCTTCATCGACGTCTGGTGGATCGTCCATGATGGCGGGATGCTCATGCTGCTTCCCTTCCTCCTCCGACAGCACAAGGTGTGGAGGAAGTGCAAGATGCGCATTTTCACTGTGGCCCAGATGGACGACAACAGCATCCAGATGAAGAAAGACCTGACCACCTTCCTGTACCACCTCCGTATTGATGCTGAAGTTGAAGTGGTGGAGATGCACGACAGCGATATTTCGGCCTACACCTACGAGAAGACCCTGGTGATGGAGCAGCGGTCACAGATCCTCAAACAGATGCACCTGACCAAGAACGAGCGTGAGAGAGAGATTCAGAGTATTACCGACGAATCCCGCGGCTCCATCCGCCGCAAGCACCCAGCCAACGCCCGCACACACCTGAGCGTCACCGAGGAGCAGCCAGGGGGCAGCGAGGAGGAGAAACCAGAGGAGGAGGTACAGCTGATCCACGACAAGAACGCCACCCCGACCCCGGCCAGCCCCCAGACCCCTGCCGAGGAGGTCCAGACCCCCGGCGAGAAGGTGCACATGACCTGGACGGACAAGGCCAAGGCCACAGCTGCCAGCACTCCAGAGGGCATCAAGGACATCTTCAACATGAAGCCGAACCAGTCCAACGTGAGGCGCATGCACACCGCTCTGAGGCTGAACGAGGTCATAATTAAGAAGTCCCAGGAGGCCAAGCTGGTGCTGCTTAACATGCCTGGGCCGCCCAAGAACAGAAAGGGCGACGAGAACTCCTGCAAAGTGCTGGCCCTTAactcctcctctcccccagaCATGGAGTTCCTGGAGGTCCTGACCGAAGGCCTCAATCGGGTCCTCCTCGTGCGTGGTGGCGGCCGTGAGGTCATCACCATCTACTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008019 True 3039 mRNA 0.59 24 39592332 39628102

Neighbor

gene id symbol gene type direction distance location
AMCG00008016 NA coding downstream 25778 39557576 ~ 39566554 (-)
AMCG00008014 pcif1 coding downstream 50386 39528389 ~ 39541946 (-)
AMCG00008017 LOC107744395,LOC107587627 coding downstream 67006 39518444 ~ 39525326 (-)
AMCG00008018 ube2c,LOC107744406 coding downstream 75065 39513466 ~ 39517267 (-)
AMCG00008015 tbc1d20 coding downstream 102569 39482586 ~ 39489763 (-)
AMCG00008025 tfap2c,LOC106565286 coding upstream 301429 39929531 ~ 39945352 (-)
AMCG00008026 rtfdc1,LOC106565284 coding upstream 353510 39981612 ~ 39984433 (-)
AMCG00008029 LOC106565282 coding upstream 358826 39986928 ~ 40008602 (-)
AMCG00008028 LOC108233014,LOC100703573,LOC101171829 coding upstream 422927 40051029 ~ 40061973 (-)
AMCG00008032 NA coding upstream 449406 40077508 ~ 40091201 (-)
G27833 NA non-coding downstream 136474 39455040 ~ 39455858 (-)
G27686 NA non-coding downstream 669644 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 736555 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 812580 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 824764 38749127 ~ 38767568 (-)
G27904 NA non-coding upstream 135828 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 162444 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 214229 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 649061 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 999675 40627777 ~ 40632764 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 87740 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 500437 39088557 ~ 39091895 (-)
G27720 NA other downstream 536653 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 542735 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 654669 38924581 ~ 38937663 (-)
AMCG00008042 NA other upstream 640170 40268272 ~ 40288574 (-)
G28202 NA other upstream 1388057 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1571387 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1777689 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 2218831 41846933 ~ 41849954 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033235 slc12a5a coding NC_007117.7 CM002890.2 55449300 ~ 55585423 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_17146962_17186247 NA coding CI01000340 null 17146445 ~ 17186492 (-)