AMCG00008020


Basic Information

Item Value
gene id AMCG00008020
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39817027 ~ 39834952 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008020
CCCCGGAGAGCAGCCGGGAGTTGAAGCGGCAGGAGGCGCACGCTGGGCGGAGCGGCTGGGCTGCGGACTCGCACACCGCTTTtcacaggaaagaaagaaagaataacacGGGCAAACTATACAAGTTAATGTACTATTGAAACCAGGctacctgagagagagagatgggcgACCTGAGCGAGGAGGCGATGCTGGACTACATTTCCGCGGCGGGAGGCAGGGTCCGAAACTCGGACTTGGTGAGAAGTTACCAGCACCTGATCAACCACAGCGAGCAGGAGAGCCGCGCCAAGTACCGAGACGAGTTCAAGGTTATCGTAGATAAAATCGCCCTGGTGAAGACTGAGAACGGTGAGAAGTACCTGGTGCTGAAGAAGAAGTACAAGCAGCTGATGCAGGAGCGAcagagggagcgggagaggcagagggaggtgATGTCTGCAGGGGCCAAGCAGGCCAGTGTGCCCAGGCCCACAGCGCTGGTGCAGTGGGAGGGCGGCGGGGTCATCTGTGCCAACCCCAGCTgggaccccccacccccggcctGCGCCTCTCTGGGGGAGAACGCAGTGGACTCTGTCCCCGGGCCCAGCCAGCAGCCCAAGAAACCCACCCTGGTCTCCTGGTGTGAAGGGCCTGCTATCACACTCACTGAGGACACCACATCCCCTGAGCCTGCAGGGAAGATGGAGCTGCCCTCGATCTTGGTGCAGGACGAGCGCTGCCCCCCGCCGGAGGAGCAGGACGAGGCTCCGCAGCTTCTGCCCCAGGAAGTCGCAGAGGAATCCCCGCCCCTCAGCCACAGAGAGGATGACATCGATCCTGAAACGGGGTCAAAGtCGGGGTCGGAGCAGGATGAGGACGGCGCAGAAAGTGTGGGATCCACTGCTGTCGCTGCCCACCTCAACCAGCTGCTGAAGCAGGAGCCCTCCCTGGCCTACAAGAAGACTGCATTGCACTGGGCTGCCAAACACGGCAAGGAAGATATGGCCACTATGCTGGCCAATGCTGGAGTGGATGTCAACACCAAAGCTGGCTACACCCCCCTCCATATCGCGGCACTACACGGACACCGGCACATCGTAGACCTCCTCGTCAGGACCTACGGAGCCAAGGAGAACCTGCGTGACTACAGCGGCCACCTGGCGTTCCAGTACCTGAACATGGAGGACTCCCGCGAGGAGGGCAGAGGGCTGCaaTTCCCAGTGTCGCAGGGCATTGAGCGCAGGAACCGGAAACTGTCGTCGCTCTTTACGCACAAGAATTCCGGCAGCTCCAAGAAGAAGTGGGGCTCGGTGGAGGACCTGGCAGcggtggaggaggagaagggtgGCCCCCAGCTGCTCCTGCCCCCCACTTTCAGGCCCAGGAAGTTCTCCCGCTGACCTCAGCCAGCACTCCTCCACAGATCCCAGCATGCCCTGGGCCAGGGGGCGGAGTCATTTAATCGGTCGCTGCAGGGCCACACCCCTCGGCCAGCCCTCCTCCGGTACCGGCGCAGCAGGTGTTCCGTCAGGTATGGCTGTGGTCCAGATTTGGGGTCCACCATCAAAAGGACCGGACCGGGCTCTCGACTCCCATTGAAACGGGACGCAACGGCAGAGACACTGTCGTTCCTCTGCGATGCGTCCGAAACGCCACGCAATCACTGCTGATGCAGGCTTGGAGGTCCGGAGTCGATCTTCATCTTGGAGATCTCCCCTCCACGACCACCGGACTTTGGATGTGGCCATTCTCTTATAAGAAGTTAGTCCTTTGTGTTTTCTAGTTGGaatatctgtttttaatatgtatctatgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatatatatatatatatataccacatGTATATACTCGCACACAgagaagtttgtttttttttagatatttttttacattatccTACGCAAAGTTCCCTGTGCGAAGCCAtgtttattatatgtataaCAGTATAAGTATATAGATATTAACAAACTGCAGAGGCTCGTACTGTATTCAGTGCGTCTGCTGTGCACTTTAAACAATGCAGAGGTGACATCCATCCAGGGCTTCGTCACAGCGGCTCTCCTTGCATTCCAGCTGCTTCAAATGTTTTGCTGTGGAAGGAGGGCGATGCAGCTCTTGGTGAAACTAAATGACTTCCCAGACTGCCTTCACATTCCTCTAAATACTGTCTTCTACATTTTCACGccttaatgttttccagaggttttacttttgttattgCGATTTGTTGTATTCGACTAAAAGCACTCAGTGTCTTGaaaaattgtttatatataaaaaaaaagtaaaattgttatattttgatCAGTGTTATTTAATCTAATGTTAATGTCACTTTCAACATAAAATGCGGCACAGAAATGTGAttgagtgtgtgcatgttttaatataaacacatttatatttttgcaatgAGTTGAGAGGTTTTGAAGTGACAAGTATAGTTATTGTTATAGTTATTTTTACTCGTATTACAAACGCAAGGTCATGTACAGCTTGCCGTACTTTCTGTAAGGCAATAACTGATGCTAGCAGCATTAGTGAACAGCCACTGTGCTTAGGACTGCATAGACAAAATACCAAATATTGAATTTACTTCATTACAAATAGAAGTATCCCTTGTGCTGTAATATCAAAATTAAACCACTTTggctttgtgttattgttgtgaata
>TU34945
CAACACCAGACCCATTAAGATTTCACAAAGTTCACTCTGTTGCCTAGACTCAATCCAACCACAAAAAACTGGCAGAGGTTCTGGCCACACTTAGTTTGGGCTTTCCAtcagatttgtatgtattgtattacatttttttttatttatatacacacacacagtgatcGATGGtgattatttatacatgtatttagttGTAATGAGAtttctcgcacacacacacgcctggCGCACTAGGTTAGCGCAGTAACGGATCTCCAGCTGCTGTTTTGTAACCTGTGTATCTGCACCCCCCCTCGGCAGGGCTACACCCCCCTCCATATCGCGGCACTACACGGACACCGGCACATCGTAGACCTCCTCGTCAGGACCTACGGAGCCAAGGAGAACCTGCGTGACTACAGCGGCCACCTGGCGTTCCAGTACCTGAACATGGAGGACTCCCGCGAGGAGGGCAGAGGGCTGCaaTTCCCAGTGTCGCAGGGCATTGAGCGCAGGAACCGGAAACTGTCGTCGCTCTTTACGCACAAGAATTCCGGCAGCTCCAAGAAGAAGTGGGGCTCGGTGGAGGACCTGGCAGcggtggaggaggagaagggtgGCCCCCAGCTGCTCCTGCCCCCCACTTTCAGGCCCAGGAAGTTCTCCCGCTGACCTCAGCCAGCACTCCTCCACAGATCCCAGCATGCCCTGGGCCAGGGGGCGGAGTCATTTAATCGGTCGCTGCAGGGCCACACCCCTCGGCCAGCCCTCCTCCGGTACCGGCGCAGCAGGTGTTCCGTCAGGTATGGCTGTGGTCCAGATTTGGGGTCCACCATCAAAAGGACCGGACCGGGCTCTCGACTCCCATTGAAACGGGACGCAACGGCAGAGACACTGTCGTTCCTCTGCGATGCGTCCGAAACGCCACGCAATCACTGCTGATGCAGGCTTGGAGGTCCGGAGTCGATCTTCATCTTGGAGATCTCCCCTCCACGACCACCGGACTTTGGATGTGGCCATTCTCTTATAAGAAGTTAGTCCTTTGTGTTTTCTAGTTGGaatatctgtttttaatatgtatctatgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatatatatatatatatataccacatGTATATACTCGCACACAgagaagtttgtttttttttagatatttttttacattatccTACGCAAAGTTCCCTGTGCGAAGCCAtgtttattatatgtataaCAGTATAAGTATATAGATATTAACAAACTGCAGAGGCTCGTACTGTATTCAGTGCGTCTGCTGTGCACTTTAAACAATGCAGAGGTGACATCCATCCAGGGCTTCGTCACAGCGGCTCTCCTTGCATTCCAGCTGCTTCAAATGTTTTGCTGTGGAAGGAGGGCGATGCAGCTCTTGGTGAAACTAAATGACTTCCCAGACTGCCTTCACATTCCTCTAAATACTGTCTTCTACATTTTCACGccttaatgttttccagaggttttacttttgttattgCGATTTGTTGTATTCGACTAAAAGCACTCAGTGTCTTGaaaaattgtttatatataaaaaaaaagtaaaattgttatattttgatCAGTGTTATTTAATCTAATGTTAATGTCACTTTCAACATAAAATGCGGCACAGAAATGTGAttgagtgtgtgcatgttttaatataaacacatttatatttttgcaatgAGTTGAGAGGTTTTGAAGTGACAAGTATAGTTATTGTTATAGTTATTTTTACTCGTATTACAAACGCAAGGTCATGTACAGCTTGCCGTACTTTCTGTAAGGCAATAACTGATGCTAGCAGCATTAGTGAACAGCCACTGTGCTTAGGACTGCATAGACAAAATACCAAATATTGAATTTACTTCATTACAAATAGAAGTATCCCTTGTGCTGTAATATCAAAATTAAACCACTTTggctttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008020 True 2699 mRNA 0.52 10 39817027 39834952
TU34945 False 1952 TUCP 0.46 3 39832389 39834936

Neighbor

gene id symbol gene type direction distance location
AMCG00008021 NA coding upstream 7998 39797335 ~ 39809029 (+)
AMCG00008022 NA coding upstream 26363 39784824 ~ 39790664 (+)
AMCG00008011 NA coding upstream 246095 39568443 ~ 39570932 (+)
AMCG00008009 NA coding upstream 261205 39550076 ~ 39555822 (+)
AMCG00008012 NA coding upstream 304236 39512273 ~ 39512791 (+)
AMCG00008023 NA coding downstream 8272 39843224 ~ 39848246 (+)
AMCG00008024 NA coding downstream 137611 39972563 ~ 39975851 (+)
AMCG00008027 NA coding downstream 227769 40062721 ~ 40074110 (+)
AMCG00008030 NA coding downstream 240274 40075226 ~ 40076278 (+)
AMCG00008031 NA coding downstream 266234 40101186 ~ 40114340 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 212199 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 525806 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 550354 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 608734 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 757293 39059531 ~ 39059734 (+)
G27960 NA non-coding downstream 123035 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 216938 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 442462 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 916523 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 923746 40758698 ~ 40759010 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 224616 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 271420 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 312650 39503079 ~ 39504377 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 1108112 38692739 ~ 38708915 (+)
G27551 NA other upstream 1380432 38432045 ~ 38436595 (+)
G27974 NA other downstream 221680 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 406360 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 829020 40663972 ~ 40721745 (+)
G28395 NA other downstream 2157907 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2578680 42413632 ~ 42437228 (+)

Expression


Co-expression Network