AMCG00008021


Basic Information

Item Value
gene id AMCG00008021
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39797335 ~ 39809029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008021
GGTAGCATGGACTCGGAGGAGAATGAGGTGGAGAGCAGCAGCGACGCGGGGCCCTCGGGGGTGGAGCAGCCCTCGGAGAGTGGCCTGGGCATGGAGACCTCGGAGGCCATGTCTGCCGACAGCAGTGACACGGCCGCCATGCCCGGCCTCGCGCCCGAGTCCGACTCCCACGTGGGACAGAGTTCCGAGGGGATTGTGGAGCTGATCCCAGAGACCAGCTCCAGCACTGACGTCAGAGCGGTGGTCCATCTCCCCGACTCGTCCTCCGTCGCCCAGTCCACCAGCGTCTCCAGCGTGTCCACAGTGACGCAGTCCATCCTGGTGTCGGAGTCAGCGCAGGTGCTGGTGCACTCCAGCGCGGTGTCGGACGGGGGGATGATGGTGTCCGACTCCACGGCGTCCACCTCCACCGACCTGGGCTCCGCCATCGACAAGATCATTGAGTCCACCATCGGACCCGACATCATGAACGTGACCAGCGCAGAGGATGGAGGCGCCGAAACCACCCAGTATCTCATCCTGCAGGGACCGGACGACGGTAACCCCATGGTGTCCCAGATGTCCTCCTCCAGCCGCATCACCATCGAGGCTCTAGGGGACGGGCCCACCTCCACCTGCCTGGACCAATCGGAGATGACGGAGCACAGACGGGGGAGTCTGCCCGACCCCGAGGGCATGGACCCAGACCAGCCGGACCAGCCGGGGCACTCTGGGTACCCCGAGCATGAGGGGCACATGGCCCAGCCCGACCAGACGGGGCACTCCCGGTACAGCGAGTGCACGGGAGACCGGCCCGACCAGACACAGCACTCGCAGTACGTGGAGTGCAGCGCGGACGACTCCAGTCCGTCCCGGCACTCCCACTACATCGAGTGCACAGTGGACGGCTCCGACCGGCCACAGCACTCCCGCTACGTGGACTGCAGCACGGGTGGGCCAGAGCAGTCGCGGGAATACGCCGGGGACGACTCCAACGACTCCAGCCTTTCGCACCGCTCCCAGTACGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAATATGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTATGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTATGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTATGTGGAGTGTAGCTCCGACCAGCCGGGACATTCCCAGTACGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTACGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTACGTGGAGTGCAGCACCGACCAGCCGGGACATTCCCAGTACGTGGAGTGTAGCTCTGACCAGCCGGGACATTCCCAGTACGTGGAGTGCAGCTCCGACCAGCCGGGACATTCCCAGTACGTGGAGTGTGTGACAGATGGCCCTGACCAGCCCCAGCACTCCCAGTACATCGAGTGCTGCGTGGACGACTCCGGCCAGCCACCCCACCTGCAGGAATACGCCGAGTGCAGCGTCGACGGCTCCGAACCGGCCGAGCACTCCTGCTATGTGGAGCGCGGCGCCGTCCCGGACTCGGAAGGGGGGCCACGGGGGTCCCTGTACGAGGAGGACAGCTCGGAGGACCAACCGGATCAGCCTCAGCACTCGCACTACATAGAGAGCAGCGGCGACGGCCCGGACCAGCCCCAGCACTCCAGGTATCCCGAGCGGGAGGCCGTCCCCCACCAGCCCCAGCACTACGAGCCGGAAGAGGAGAAGGGCCGGGCGGCCGGGCCTCGGCAGTCTGGGGCGCAGGGCAGCGGACCAGCTAGGGGGCTGGGGGCGACACCTGGGCCCCGGGACCGCCCCCCAAACCTGGCAGAGCTGGAGGAGATgatggaggtggtggtggtgcagCAGTTCAAATGCAAGATGTGTCCCTACAAGAGCGTCTCCAAGGACACCCTCATCAACCACATGAGAGACCGGCACTTCAAGAATGCTGGGGCCCCACCCCCGAGGAAGCGAGGTCGAGGGCGTCCGCGGCGCTCCGACTCCCCGCTGCTCCGTGAGGGTGAGGTGAAGGTGGAGGAGCCCACCGAGGAAGAGGACGATGACATCATTGACGCCGGCGCCATTGATGATCCCGCAGACGACAGTGACTACAACCCAGCGGAGGATGACTGCCGGGGCCGCCAGCCCTCCCAGCTACGCAGCGCGCCCACCTCCTCCTCGTCCTTCTCGCAGGGCCGGCCGCGCCGCACGGTGGTGCGCCCCAGGAAGTTCCCCAGCACTGAGGGAAGCCGCCGCGGCCAGGGAGCTGCGGCCGGCGTCTCGGTATCCGCTGTGCCCCACAAGAGCGCAGACCCCCAGGGCTCAGAGGAAGCCAGCTCCTCCGGACTGGAGACGGGGGCTGCCACCTCCGCCAACGAGAACGGCGCAGAGCCGGGCGTCAGCCAGTCTGACTCCGAGAACAAGGACCCCTCCTCCAACACCGGAGCGGAGGAGGTGGACTTCTATCCCAGGAAGCGAGGGCGGCCTTCCAAGCGGTTTCTTCGCAAGAAGTACAAGAAGTACATGACACGCAAGTACTACTACAAATCCCACAAACCCCTGCTGAGGCCCCACAACTGCCGCATCTGTGGCTCCCGGTTCCTGTCGCAGGAGGACTTGCGCTTCCACGTGGAATCCCACGAGGGGAACGACCCCGAGCGCTTCAAGTGCCTGCAGTGCAGCTACCGGAAAAAGAAGACAGACCTGATCCCCAAGATTACGCAGTACCCGTGTCCAGTGTGTAACCGCGTGTACCCCATGCAGAAGCGCCTGACCCAGCACATGAAGACGCACAGCACGGAGAAGCCACACATGTGTGACAAATGTGGGAAGTCATTTAAGAAACGCTACACCTtcaaaatgcatctcctcactCACATCCAGAGCTACGGCAACAGCAGGTTCAAGTGCGAGTTCTGTGAGTACACGTGTGACAACAAGAAGCTCCTCCTCAACCACCAGCTGTCCCACACCAGCGACAAGCCCTTCAAGTGCGACTACTGCAAGTACTCCACCACCAAAGAGGACTTCCTGGTGTCGCACATGGCCATCAAACACACCGGTGAGCAGCAGGGTCTTCTCTGCCAATATGCCCCATCTTCTGAGCCCGCCAAGCAGTTCTATGGATGTGGAAAGGAGGCTGAACCAGAGACAGATCTACGGCGCTCTTCTCTCACccagcactctctctctgtctccccgtGCGCTTCCCCAGGGGAGAAGCCGTTCTCCTGTGAGCTGTGCCACTTCATGACGAAGCATAAGAAGAACCTGCGCCTCCACGTGCAGTGCCGGCACCTTGACAGCTTCGAGGAGTGGTGCCACTCGCACCCGGAGGAGCCgccccgccgccgccgccccTTCTTCACCCTGCAGCAGATCGAGGAGCTCAAGCAGCAGCACGACCACACGCAGGCCGTGCAGGACAGCATCCGCGGGCCCATCgtgacGATGGACCAAGTTGGGTTTCAGGCCATGCAGGCAGTGGAGAACTCTGGGGTCGCTCAGGACTCCCTAGCAAATGCCACTATCATCTACGAGCAAGCAGAGACCACAGACCTGTCCGCCCAGAATGCACTGGACCTGCTGCTGAACATGAGCAACCCACGGGAGCTGGTGGCCGTGCTGAAATCGGATGGGCTGGAGGGGGCCGAGGCAGACTCCGCGGGACCGTTGCCCTCGCAGCCCCAGAAGGTGGTGACGTTCCACGTGTCGGAGCACGGAGAGACGCTGGTGCAGGAGGCGTTCGAGTCCGGCGCCGTGGAGGGGGGTGCGGAGATCACGCAGATCGCCATCAACGCCTACCAGGGCGGCGCCGACTTCAGCGTGGTGGAGCAGGCCGGAGAGGAGATCCACAGCACCGCCCCCGTCTACAGCAGCAGTGACAGCAGCCCTGACAGCTCCCACCCTGTGGTCGTCAGCAGCGCCTCTCTCCCCGGGACCATCAAAGAGCACAAGGGCAAGTACTACCTGACCTCTGGGCTGGGTGGAGGCACGCTGCAGCAGATCGAGCTGAGCAGCGAGCCCCCCAGCTCGCCCCCGTcggcctcctcctccccccagcAGCTCAGCTCCAAGAAGTTCTCCTGCAAGATCTGTATGGCCTCCTTCCACGGCCGCGCCGACATGGAGACCCACAAGAGGGCGCACGTCGGCCCCCACATGTTCAAGTGCCCCGACTGCGACTATGCTGCCTCCTCCTGGCCGGATGTCAGGAACAAGAAGGACCTGCGGCGCCACATGATGACCCACACCAACGAGAAGCCCTTCGCCTGCGATGTCTGTGGTCAGAGGTTCAACCGCAACGGGCACCTGAAGTTCCACATGGAGAGGCTCCACAGCCTGGACCCCCCTGTGCGCAAGACCCGTCTCGGCGGCTCCCAGCAGGCCATCATCCTCAACAGCAACGAGGAGGCCCTGGCCACGCTGCAGTCCGCTCTGCAGGCCGGCCAGACCGTGATCACTCCAGAGAGGCTCCAGCAGGCTCTGGGACAGGACCACATCATCGTGGCCCAGGAGCAGACCCTTTCTGACCAGGAGGAGGCCACATATATCCAACAGATAACCACCGTGGACGGCCAGACAGTTCAGCACTTGATGACGGCGGAAAACCAGGTGACCGAGGTCCAGTACATCATCTCACAGGACGGTGTTCAGCATCTCCTCCCACAGGAGTACGTGGTGGTATCTGAGGGCAACCACATTCAGATGCAGGATGGGCAGATTGCGCACATCCAGTATGACCAGGATGGAACCTTCCTGCAGGAACAGCAGATCGCTCTGAGCCACGACGGGCAGATCCAGTACGTCCCCATCAGCTCGGAGCAGCAGATCCTGAGCCACGAGGACCTGGAGGCGGCCGCCCACTCTGCTGTGACGGCGGTGGCAGACGCAGCCATGGCCCAGGCCCAGACGGTCTACGCCACCGAGGCCACGGCCGAGCAGCTGGAGCAGATGCAGCAGCAGGGCATCCAGTATGATGTCATCACCTTCACGGAAGAGTAGCGGAGCGAACCCTGTGCGTCGGCTGCTGGGGCTGGAACGGCACGCTAGAGGTGCACTGCTGCTGCGGCAGCCTTCAGGCAAATCTGACATGGATTTCACTAGATTgtcgtctccctctctctctccctctctctctctctttggtgGGCTCCTATTCTACCCA

Function

GO: NA

KEGG:

id description
K24371 ZNF335; zinc finger protein 335

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008021 True 5194 mRNA 0.64 25 39797335 39809029

Neighbor

gene id symbol gene type direction distance location
AMCG00008022 NA coding upstream 6671 39784824 ~ 39790664 (+)
AMCG00008011 NA coding upstream 226403 39568443 ~ 39570932 (+)
AMCG00008009 NA coding upstream 241513 39550076 ~ 39555822 (+)
AMCG00008012 NA coding upstream 284544 39512273 ~ 39512791 (+)
AMCG00008013 NA coding upstream 285463 39509459 ~ 39511872 (+)
AMCG00008023 NA coding downstream 34195 39843224 ~ 39848246 (+)
AMCG00008024 NA coding downstream 163534 39972563 ~ 39975851 (+)
AMCG00008027 NA coding downstream 253692 40062721 ~ 40074110 (+)
AMCG00008030 NA coding downstream 266197 40075226 ~ 40076278 (+)
AMCG00008031 NA coding downstream 292157 40101186 ~ 40114340 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 192507 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 506114 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 530662 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 589042 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 737601 39059531 ~ 39059734 (+)
G27960 NA non-coding downstream 148958 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 242861 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 468385 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 942446 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 949669 40758698 ~ 40759010 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 204924 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 251728 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 292958 39503079 ~ 39504377 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 1088420 38692739 ~ 38708915 (+)
G27551 NA other upstream 1360740 38432045 ~ 38436595 (+)
AMCG00008020 NA other downstream 7998 39817027 ~ 39834952 (+)
G27974 NA other downstream 247603 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 432283 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 854943 40663972 ~ 40721745 (+)
G28395 NA other downstream 2183830 41992859 ~ 41993377 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_02087939_02096946 NA coding CI01000052 null 2087939 ~ 2096946 (-)