AMCG00008027


Basic Information

Item Value
gene id AMCG00008027
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40062721 ~ 40074110 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008027
ATGCTTATGCGAGGTTCAGAGAGGCAGACCCCAGTGCCCTGCCAGCCCAGGTTGTCCTCTGTGCTGCTGACTCAGCCAGTCCCGCCCCCTGCTCACTTGAGCCCCAATATCCCTTCCTCCATCACTCATGTTATCACCTGCCACAGAGGAATGTGCCGTAACCTCCACCAGGGCACCAAGACTCCAGTGATTATCAGTGCCTCTAAACTGCTACTAAACTGTGAAAACTGCAATATCTTCCCAACTACAGCCCAGCAGCCCTCCAAAACAGAGCTGCAGAACACAGTGCAGTCCAGACTGTCTGCGAGGGCCAGCTGGGGACAACTTGCGCAACACGAACACGTCAGCCTGAGAAGTGATGGTCTTGACATTTTAGTTGTCCCAGAAGTGCGCCTGGAGCGGCTTCGGAGTCCGATCGCGGGTCACAGTGTGCGCGGCCTCGTGCACAGTTCAGTCTTCTACAGCATCACATGAGGGTCTCGGTTATGATGATGACAGAACAGAAACACACCAGAAAACCTCTTTGTGCACATAAAAAATATGGAGTAAATCACACAAGAACCCAGGTCATTTTACGCTGGTATTTTACTACAGGCAGCAGAGGAGAGGGCCAGGGTTGGCAGCACAGTCAATAATGAGGTGCAGAAGACTGCTGACAGGGACAGCTCAGGGAGAGCCGGTAAACACATTTCTAGAAGTGCTGCCAACTCACAGCAGGAAGTTCAATTACTgccactttatttttctttgtctttcttcttttcactgatttaaaaattatCCCCACAAACTAAATAATCTTCCATTATTCACCAAGACACCCAGGTGAAATGAAGGGTTTtcattatacatataaaaggCCACTCTTGATCCAATCACTTGGCAGtttatttcaagaaaataagtaattctGTGCAGCTCGACAGGTGATTAAGGTTAATTTGTTAATGTGCTTTGCTGAATCTGCAGAGTTAAACTCATGCAGTTAAagttaattactattattatatttcttagcagacgatCTTATCTAGAGCGACTTACAATTCTTACAATTTATCACATTATTTGGATGTACAATTATCCATTTTATTAAAGTGTCCTCCACCtggaacccacaaccctccgtTCAGGAACTCAGTGCCCTGAcggctactccacactgctgcccagaataattattcatatttacactATGGCTTGTAAAACAGGAATTTTAAAGATCTTGTTCACAGACTTTGAAAAGATGACCAGCTCCAGGAGGGTGTGTTATAGGGGGAGTCCATCACAGCTGCACCAAAGCCAAACACACCCGTGAGATCTGCTGAGCCTGACCATGAAAGGTCTACAGGGTTTAAAGTTATGTTCCTGTATTATGTCCATAGTCACATTTCTGTGTGATTCAAGCTATCGTTCACCCCCCAGGGCCGAGAGAAACCCCTGCGTGCCTAAGATGCTGCTGAGGTCTTCTTGCCTGGATCATGGAAAGATGTTCTCAACCTCAAAAGTCAAGGAACATCCCAAAAGAGTTTAATAGGCAACATTTTGGTAATGACAAACTGTGGTTATTCTGTGTGTGCAGGAGCCACAGACCAGCGTCCGTGTTGACGATACTCATTAAACAAgaatggaatttattttccatgaagGTAAACAACCCTTGATTTTAATTGCCAAGTTTATCCTTGGTGCACCAGGTCATTAAATCTCTGTGACGAACTGGTATCTCCAGAATTTTTAATAGGTGTGATTCCCTAGGCAGGTTGTTTAACAGCTAGTGTTGCCGATTAACTTACTTAAAGAGCAAAATGTCTTAAGGTGGATGGCCACTGGCAGCAAATTAGAGGAATGACAGACAATCCCTACACACGAGCCCTGACTGCCTGCCCTTCCCGTGATGTCCACTGCCAAGGCAACTCAGcagcaacacaatacaaatttaaattatcATATTGCTGGGCCATCCTTCTCCTATAagtttttagctttttttccctctctctataGTAAGAAAGAGCTCAAGGTTGACCAGCCTGCTTCCCTTAAATCCCTGTAGCTTTACCTGGGTGACTGCCAGCCCCCTGAAAGGAGCCAAGAAACAAACATGGAGTAAGCACGAACTGGAGGACTTCAATGGCCTCCCTGGAGAAAAACCTCAGGACCACTTTATTCTTAGACATTCCCAAGAAAAACAGCTGAGCCCCGGAGGGCCGTCCTTCCAGACGTTCCCAGCTAAATAAGGAAATAGCCAGGCGGTGGCTCTTGCCTGCTGCTCCCAGCCAACTGCTGCACGCCCATTCACCCAGGCCAGAGCTGATCTGAAGTGGATCTGCAGTGTTTCACAGAGAAGGGGCAAGGACGATTTCCCTTCACATGCAGCCTCCCAGTTCCCTTATCCAAGGTGGCAGCTTGATATTGTTGCTAATCCAAACACCACCCATGTGTCCCCACTTCTCTCAAACCCTGTTTTCCAAATCTCTCTAGTATCTTGTCTTGGCATAGCATGAGCATTCAAGCTAGAATTACTAGAATGACTAGGGAATAACAGACAGaagacattattatttcatgtgTATACAAGTAcagatatatgtatgtatgaatgtatgtatttggttGATACATTAATCCAAGTTCATTTACAAGGTTTGTATACATAAtacagagaacaaaacaaacaatagaaaACAATAGCAGAATACATTATAATGTTGAACAATTTAAATGAGCGGTTTTGCATTTAAGGtatggaagagaagaaaaaacatatcaaCAGTACTCCAACTGAAAATAGTCCTACCATGAAAACAGTGCAGTTCCACAAGGCTGGTGGTGGGAGTAATGGGCTGTAGCAgaatgacctttgacctcccaGAGTCCATCAAGAATGGATCCCTATGTGCAAGAAATAGCTCACAGTGCCATCTGCAGTCTTACACActacataacacacacacatacacaaccaGGCTTCATGTAAAGCAGTGGtttccaaccctggtcctggggacccagtGTCCTACAAGATTGTTGTTCCAGCTGAGATCTCAATTCCTAATGATTggcctaatcagagcttattaaTCATTTGAAACCATGAGAGGTGTCACATTAAATATTGAGGTATTTTAGGCACCCGTATTCTCCAACGTTTTGTAAgtttaaccattttaaaagttgaaTTAAGGGAATTATATGTTCAATTAAGatttcaattagttaattgacagtgcagttggatcaaaaaccagcagcaCAATGGGTCCACGGGACCAGGGTTAGTAACCACTGATGTATAAACACTATCTGCATGTGAAACaagtatttacttattttatttagtatggTGTTTGCTTTGATCACGGTCTTTTAGTAAAGCACACACTTCATTGAACAAGCGCACAAGCAGTGTAATATGACAATGCATATATTCTCTAGCGAGGGTGGGGGACACAGTAGAGGCGAATACAACCAGTACAGAAGCTTAAGCTGCCCACAGACGACACGGGAGACAATTGCATGCCATTGCATTCTGTATCTGCAGTGTGCCTCCCTCTGTCGGAAGAGAGTGTGTAGTGCCCTGCACAAAGACGTGCCACTTCTATTCGCCCAGTGGGCACCACGTAGGGGAGATTGCTGTGGTATGCTTTGAGTTTCTTGATCTAATTGTTAGGTCGAGTTGTTCCTTTGTTTTGCGCTTCTCCAAATCCGCGCGTCCCTCCACCTCCCACTCAGTGGCGCTTGTCCACTGCTGCAGCTGCAAAGTGCAATCGGATAGACCCTGAGAGAGCATGGGCTGTGAGGGCATCAAGCAAGCTTTGTACATTTCTGTGTGGTACAGGAGTCGGTGCACAGAAAGCAGTTTGACTGAAAAGGTTATGAGGATGCACTGCTGCTGCCATCCCGCTGCGCAACCCAACAGCATTGTACTTACACCATGATTAAGACCCCCGACTGAAAAGACAAAAGAGGGGGTCAGAAACTGAGTTAACGAGATAATCAGAGGATAATGACACGTCTGTTGATTATAGCTGATTAGACCTCCTCCTAGTCCTGGCGAGATGTGGTCCCTGTGAGGCTGCTGGCACCCAGGGATGCGGGCCCGAGTGGAAACGCGCAAGAGACGTGGGAATGTGTTACAAATCAACAGGGAAGCACCGAAATGAGACCTGACTTTTGGAGCCTCCCAATTTCGGAGACCGGACTATAGATACGGTATTTTTTCTATTATGTTCTGTCCCTCTTTCCAACTACATTTTCTGGGGGGAATATCTGTTTTAGTATCTGTCTCTAACTTTTACATtagctttcttttcttgtttgctttgctAAGGATAGGACTTGTATCGTCTTGTATCGCcgtgttttaataaaatgtagttttgcaATTTAGTGTTTTAGATGAGCTAGTAAATCTTGCTTTTTTTCCCTGCCGTGCACAGTTCGTGCCCTGCGCGCTGTGATTCCTGGTCAGGTATAATAAACCAAATGATTATTGAACTGTATCTTGTCCGAGGTGCGTGTACTGGGATCCCAGGCTGAATTTGCATGGGTGCAGTTTGATGGTGAGGGTGAGggccccctcctccctccccacaGTAATGCATTTGGGATGGTGTAGTCCAGCGGTTCCAGCCGGTCCTGGAGCCCCCCTGCACTGCTGGTTTTCTTTCCAACTGAACTCtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008027 True 4686 mRNA 0.45 5 40062721 40074110

Neighbor

gene id symbol gene type direction distance location
AMCG00008024 NA coding upstream 86870 39972563 ~ 39975851 (+)
AMCG00008023 NA coding upstream 214475 39843224 ~ 39848246 (+)
AMCG00008021 NA coding upstream 253692 39797335 ~ 39809029 (+)
AMCG00008022 NA coding upstream 272057 39784824 ~ 39790664 (+)
AMCG00008011 NA coding upstream 491789 39568443 ~ 39570932 (+)
AMCG00008030 NA coding downstream 1116 40075226 ~ 40076278 (+)
AMCG00008031 NA coding downstream 27076 40101186 ~ 40114340 (+)
AMCG00008035 NA coding downstream 97587 40171697 ~ 40172836 (+)
AMCG00008037 nsfl1c,LOC106566439 coding downstream 134027 40208137 ~ 40213983 (+)
AMCG00008038 LOC105906738 coding downstream 141805 40215915 ~ 40237710 (+)
G27973 NA non-coding upstream 2516 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 59021 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 457893 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 771500 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 796048 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 203304 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 677365 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 684588 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 687156 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 903544 40977654 ~ 40978428 (+)
G27974 NA other upstream 3335 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 227769 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 470310 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 517114 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 558344 39503079 ~ 39504377 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 167202 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 589862 40663972 ~ 40721745 (+)
G28395 NA other downstream 1918749 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2339522 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 3031603 43105713 ~ 43108242 (+)

Expression


Co-expression Network