AMCG00008030


Basic Information

Item Value
gene id AMCG00008030
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40075226 ~ 40076278 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008030
ATGGAGTCTCCTCCCACATATAGAGACAACTTGTGCATCAGCGTGGGAGGCCCGAGTGTGAACCAATCCACATGGAATCTGTCCAGCTGCCTTTTTGAGTTGATTTTGCCCTGGAACGGCACTGTCAACTGCCTAATCGCTCTGTTCTCGGTCCTGTCCTGCATATCCATGGGAGTCAATGGCTTCACCCTTCTTGGGATCATGAAGTCTGAGGAGCTCTCCTGGCAGCCCCGGTTTATATTGTTGAAAAACTTGGTGTTCAATGACCTGCTGATGATATGTGTCCTGCACCCCACCATCCTCTACTGTCTGATCCAGCGGCAGACGCTCTCGCTGGGGGTCTGGTGTCTGATTCAATATTACGTTGCGACTACGTGCATTTTTTGCACCATATACACTTTGACTCTTATGGCTTTGGAGAGGTACCTGTACATCTGCCATGCCATTCAGTACATCAACATCCTCACCTCCCGGCGGGTGAAGCTGGGCGTCACCCTGATGTGGCTGGTGTCATTTGCTATTACTGGTGTGTACTTGATCCTCCTGCACATTGGTCAGGACTCCCTCGCTCTCGGGAGCGCCACCTACGGCCTTTTCTGTGAGCCAGACACCATAGAGAAGTGGATGGACTTTCCCATCTTGGCCACCATCTTCAGGAAATTGCTTGGATCGGCCTCCATCCTTGTCTGTGTCTTGGTCTTCACCTTCTCCTATGTCAAGATGTACAGGGAAGCCGTGAACGCGGTGGAGCCTTTTAACCAGGTCAACAGCCGAGCGCGCAGAACCATCCTCTTCTACTGCATGATGTTCTTCCTCCAGCTGCTGCCCTGCTGGCTGAAGATGGTGACTGACATCCTGGGGGAGCTGGACAGGGTGGTTCTCAGCGACCAGGGCAGCGCCAGGGTTCTGCATGTGGTGCTGCTGCTCATGGTCATCATACCGCCCCTCATTAACCCGCTCATCTTCAGCATCAGGAACAAGGAGCTGAGGAGAGCCCTGCCACGCGTGGTTTTCAGGAGGTGGGTTCCAGGTTCCCCTGACACCTCTGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008030 True 1053 mRNA 0.54 1 40075226 40076278

Neighbor

gene id symbol gene type direction distance location
AMCG00008027 NA coding upstream 1116 40062721 ~ 40074110 (+)
AMCG00008024 NA coding upstream 99375 39972563 ~ 39975851 (+)
AMCG00008023 NA coding upstream 226980 39843224 ~ 39848246 (+)
AMCG00008021 NA coding upstream 266197 39797335 ~ 39809029 (+)
AMCG00008022 NA coding upstream 284562 39784824 ~ 39790664 (+)
AMCG00008031 NA coding downstream 24908 40101186 ~ 40114340 (+)
AMCG00008035 NA coding downstream 95419 40171697 ~ 40172836 (+)
AMCG00008037 nsfl1c,LOC106566439 coding downstream 131859 40208137 ~ 40213983 (+)
AMCG00008038 LOC105906738 coding downstream 139637 40215915 ~ 40237710 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding downstream 175934 40252212 ~ 40267152 (+)
G27973 NA non-coding upstream 15021 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 71526 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 470398 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 784005 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 808553 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 201136 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 675197 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 682420 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 684988 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 901376 40977654 ~ 40978428 (+)
G27974 NA other upstream 15840 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 240274 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 482815 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 529619 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 570849 39503079 ~ 39504377 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 165034 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 587694 40663972 ~ 40721745 (+)
G28395 NA other downstream 1916581 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2337354 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 3029435 43105713 ~ 43108242 (+)

Expression


Co-expression Network