AMCG00008032


Basic Information

Item Value
gene id AMCG00008032
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40077508 ~ 40091201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008032
GATAAACATGCCATGCGCCCGCAGCTCCCCTACAATAGGCAATTGATAAAAGAATAGTGGAAAGGTGAGCTTCAAGTTACTGCCCTCTGCTCTGGGCAGCTGTCCTGTTGGACCGGATGCAATTGGCAATATGCCGAAGCATTATTGCTCGTTACGGCTGCCTTCTGTTATTTATTGCTTTGATGTAAACTGgtacatatgtttttttattttcccttggATTACCTCCCATGATGTGTTGGTTGAACATTGTTcctaatgtatgttttttaaagttatgtCCAGCTTGTTGGAGAAGGGATGAATTTGCTCTGTGGTTTCAGACCTGCACAGCAGACTTGGGGGAAACTCATTCTCAGGTATTAGTTGAAAACAAGGAAGAAACCAGTTGTAGTGAAGGGAAGGTGGAGAGGTGTGAGCTTGAATGTCTGTTGTGTTTACAGCTCATTTTTATGCAAGGTGACTCAAGATTCCAACCACCCGGCTACTTTAATGTTAGGCGGACGGGACGGGCAGGCAGGGGAAGGGAAGgaagggaaggaaggagagatGTGCACCCCTCTGCCATGGGGACTGTGAAGAAACTGCCACCCCCCAGCTTGACACAGATGCCCAGAATGGACCTCGCTGTGATGGAGGTCAAGCTAGACTGCCTGGGCCGCAAGGTGGACCGGCTGCTGGCTGGGCAGGAGCGGGTGCCGAGAGACGCCCCACCGCAGGGCTGTTGTGGGGGGCAGCTGCTGTCTTGCGATGTGACGGCCACCCTCTCTGCTGTGACTGCCCACTGTGAGCAGCAGAGTCAGCGGCTGGAGACTCTGGAGGTGCTGGTCCAGGGCGTGCAGACCACCCTGGGGCTGCTGCTGGAACTGCAAGGGGCAAAGGCGGTCGACAAGGCTTCCTACACAGAGCAGAAAGAACACAGCCGGTCTGTAGGGAGCTGTGTAGCTGGGCTTACACAACTAAGAGGAGATCCCAGTGAAAAGaAACGAGTTATCAGTGGTGACCTGACAAGCAATCAGTGCTCAAAGAGTCTGAATTCAGTTCAAGTGACAGGGCCCCCAGTGCTGATGAAGGAGAGTGGGATAATGCACGAGACTGCCAGCCCTCAGGTTAGTGATGAGAGGGCTCGGGCCCCAGCCTCAGCAGAAGAACTGGTTTTCCAGAAAGGGGCGGCCCACAGTACATCACAGCGGGGCCCCCCATCCCCCGGGAGCCTTCTGACTCTGCTGCCCAGAGAGGATACCGTGGCAAAAACGGCTATAGGAAAACTATCCCAGATGACAAGTGAACACTCAGCAGCATACGATGTTTCAGTGACAGAGGGGAGTAAAAATAAGGAGATGACAAACCAAGACAGAGCCAGCGGAGTCTGGGACAAAGGGGAGGAGGCAGCTGCAGGTGGCGCAGCTGTTCAAACGGAGGCCCAGGAGAGAGTGGAAGTGGAGAAGGACATTTGTTGGCACACCGAGGAGATAAAAGGGCAAGCGCCCGTGGATGTGACACACACCGCCAGTCCCAACCCAGACGTCGGAGAGATGGCGCTTTCCGTCAGGCCAGGGGAGAAGTCGTTTCTTGGACCATCTCTGACACCTGGCCCCGCTCTCAGGCATGTTCACAGCTGCCCCGAGTCCTTGCATAGCTGTGGAACTGGACCGGTGGAGCCCGTGGAAGGTGGTGGCGCGAGCGCAGAGGAATCGAACACGGCTCCTGCTGCCACTGCCCTGAAGAGGAGCCAGGCGCTGGTTGCCATGGACACATCAGCCGAGCCGGTGCCCGGGAGCAGTGCCCCACCTGGGAAGACTGGGACTGCCACAGACTGCTTGGACAGCGGAGGAGCTGCAGGCGCCAGCACCGAGCAGAGACACCCCTCCCTCATTCAGATCCGGGTCAGTCCAGCGGAGAGGGGCTCAGACACCGTCGACCAGAAGTGCCCCCctaaaacatgtttgaaaatcATAGACGACGCCCCACCCCAGCCCGCACCGTTCCCTCACCGCGTGGTGTCCCTGAGGTCTGCATCCCCTGGTGCTTTATACACGGTCAACACCAAGGAGGTCCTGGGAGGAGGAAGGTTTGGCAGAGAAATGGTGAGGAATGAAGTCCAGGTGATGAACCAGCTGAGCCACGCCAACATCATCCAGCTTTACGATGCGTTCGACGGCCGCCACGAGCTGGTGCTGGTCATGGAATATGTGGATGGTGGGGAGCTCTTTGAGAGAATTGTGGATGACAGCTACCAGCTGACAGAGGTGGACGCCATGGTCTTTGTGAAGCAGATCTGTGAAGGGATCCACTACATGCACCAGATGTATGTCCTGCACCTGGACCTCAAGCCAGAGAACATCCTGTGTGTGAATCATACCGGACACCAAGTGAAAATTATAGATTTTGGACTGGCAAGGAGGTATGCATCCATTTTCTTCAGTAGAGCAACAGAGTTCCTGGCCCCTGAAATTGTCAACTTCGATTTTGTGTCTTTCCCcacagacatgtgggccctgGGAGTGATGTCATACATGCTATTAAGTGGCCTGTCTCCATTCCTGGGGGACGATGACAGCCAGACCCTGAACAACGTGCTTGCAGTGAACTGGTACTTCGAAGAGGAGGCCTTCGAGCACGTCTCTCAGGAGGCCAGGGACTTCATCTCCAACCTGCTCATCAGAGAGAAGAGTGGGCGTCTCAGTGCAGCACAGTGCCTTAAACACCCCTGGCTCAACAACATTGCAGAGAAGGCCAAGCACAACAACATCTGCCTGAATTCCCAGAAAAACTACATTGCCATCGCTGCTGCAAACCGGTTTAAGAAAATCAGCAGCTCAGGGTCTCTGACCACGCTGGGGATCTGAGCTCCATGAGCCCAAGACACCTGCAGCAGCGCAGCCATGCGTGGAGACCAGTGCATCCCTGGAACTCATCGATCCtcagctctggtcctggagacctACGGCCCCACACTTTCATAGGTCACATTCGGTCTCTCCTAGCTTCAGCCCTAAATAAGGATTTGAATTGGTGCAATTAAACATTCTGGCTCTGCAGTGAACTGCTTCAGGAGTGGCAGGGGGATGCGGGTGGGAGAGATCTCCCGATTCATCacctctggtcctggagagctacaggGGTCTTCTATTTTTTTCACATCTCGGCTGTTAGTGACTTAATAGAAAGACAGACTAAATGGGTCCACTTTACACCTATGGGGCTGTAgagctgtttttatatattgactTCAGTTACATCTTGGTGGCACAAGCTGCTGAGATTCTGTCCACTTTCCCAGTGTTCCCCCAAACTTACAACACAGGCAATTATTCACTTCCATCTGTCCAACTCATATTCTGTCTACATCTGTCTAATTTGCATAGCACAAACCTAACCTTACAGAATAACACCcccactcactctcactctccaCGGATCCCATTGATTTGGTCTTCAGTTACTGGTAAATGATGGAGTTCATTATTCACCTAAGTGGAGCAATGCAATCCTCACTCTGACCACAGGCTCAGACCTGCAAATTCAAAAGGCTAATGATTTGAGACCTGGATGAGTCATTGTAGAGCACAAttggaattaaatcaaacaaacaagaaaaaaaagagaatctAGTGGATGTGTTTACATAAAGATTCACATAAAGAATGCTTCCATAGCAACTGCTCAGAAGACGTGAAGTGGAATTTATATCAGGTGGACATGCCTTATTAGAGAtccatcaaattaaaaatcagtGGCTAAAAATACACAGTACTCCTTGGTACAAGAATGTTACTGAGACACTGGCTGGAACCGATACCAGAAGAACCAGTAGCTCCCCTGGCCCAGGGTTCAACTTCCCCAAAATAGGACGATTGCAAAAGAGGACTCTCTCACACTGTGGGCTAGACCATTGCTGGGCCTCCCCCCTGTGCCATGGCACCTCCACAGAGAAGCCAGCTCCTTCatcatttctaattaattaattatctgaaGAGAGATATGTTAATGGATAAGTAGGGCCAAAATGCTTAGGCTAATCCTGTAACCGCCTGTAGTCTGGGATTGGATGTTCTTGCTTTGCATTCATCTTTAATGATTACAGCTCTTCCCATGATTCCTAACCAGAGCAGTTTATGGAACCGCCTTTAACAGCTGAAAGATgtcttcataaaaaataaaaataaattattgga

Function

GO: NA

KEGG:

id description
K00907 MYLK; myosin-light-chain kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008032 True 4178 mRNA 0.51 14 40077508 40091201

Neighbor

gene id symbol gene type direction distance location
AMCG00008028 LOC108233014,LOC100703573,LOC101171829 coding downstream 15535 40051029 ~ 40061973 (-)
AMCG00008029 LOC106565282 coding downstream 68906 39986928 ~ 40008602 (-)
AMCG00008026 rtfdc1,LOC106565284 coding downstream 93075 39981612 ~ 39984433 (-)
AMCG00008025 tfap2c,LOC106565286 coding downstream 132156 39929531 ~ 39945352 (-)
AMCG00008019 NA coding downstream 449406 39592332 ~ 39628102 (-)
AMCG00008033 NA coding upstream 1522 40092723 ~ 40101200 (-)
AMCG00008034 NA coding upstream 41342 40132543 ~ 40137452 (-)
AMCG00008040 NA coding upstream 130166 40221367 ~ 40226406 (-)
AMCG00008043 NA coding upstream 198449 40289650 ~ 40298668 (-)
AMCG00008041 NA coding upstream 237530 40328731 ~ 40356747 (-)
G27949 NA non-coding downstream 230464 39842331 ~ 39847044 (-)
G27927 NA non-coding downstream 286024 39790546 ~ 39791484 (-)
G27904 NA non-coding downstream 313091 39763930 ~ 39764417 (-)
G27833 NA non-coding downstream 621650 39455040 ~ 39455858 (-)
G27686 NA non-coding downstream 1154820 38920970 ~ 38922688 (-)
G28036 NA non-coding upstream 185962 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 536576 40627777 ~ 40632764 (-)
G28110 NA non-coding upstream 568680 40659881 ~ 40663760 (-)
G28119 NA non-coding upstream 572716 40663917 ~ 40667862 (-)
G28139 NA non-coding upstream 657105 40748306 ~ 40750443 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 572916 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 985613 39088557 ~ 39091895 (-)
G27720 NA other downstream 1021829 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 1027911 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 1139845 38924581 ~ 38937663 (-)
AMCG00008042 NA other upstream 177071 40268272 ~ 40288574 (-)
G28202 NA other upstream 924958 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1108288 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1314590 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 1755732 41846933 ~ 41849954 (-)

Expression


Co-expression Network