AMCG00008036 (fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936)


Basic Information

Item Value
gene id AMCG00008036
gene name fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40241312 ~ 40247238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008036
ATGGGTGTCGAGATCGAGACCATGACTCCCGGAGACGGAAGGACCTTCCCCAAAAAAGGGCAGACCTGTGTGGTGCATTATGTCGGTTCATTGACAAATGGACAGAAGTTTGACTCATCCCGCGACAGAGACAAGcctttcaagtttaaaatggGAAAACACGAGGTCATCCGAGGGTGGGAGGAAGGAGTTGTCCAGATGAGTGTTGGTCAGAGGGCCAGGCTCACCTGCTCACCGGATTTCGCCTACGGATCTAAAGGCCACCCTGGCATCATCCCACCCAATGCCACTTTGATTTTCGATGTGGAACTTCTAAGCCTGGAATAAAGCAACCCGTTATGTTGCCTCCTACCTTGGGAACATGGAGAAAGCTAGGAGAGTGTGCACTTGAACATAAGGGGCTTGTCTTATAGTTCCACTTTGGTCACTATCTATCCATATAGAAAAGTATGTGTATCATCAGTgagagctttttgtttttctttgttttttacacaCCCTTTTAAACTATGGGCCATAACCTTAAAAACCTCGTGACGTTCTtaatcttgaattgaattgtgcttttctttgtcctatttttttttttggtgtagaATAAGTTGTGCATGATCAAGCATTTACAAATATACCaatgaaaagcagcagcaggaaaATTTTAACCTGGTTGAATCTAAGCAGTAGATCTGTGGGGTGCTACAGCCATGAGACCAACACGATGTTTAAACTGAGATggggaaataaaaagcacagtCTTAAACTTTTCACTCTTTGCTCCTGGTTGTTCTTGAGACGAGGATATTGCACCAAATGTACTGTGCAGTCTCTTAGGAATTGAGAGAGGTTGCTTTCattataatagaatatatttggTTAGTAAAACAATAGAGCCACTGTTACTACTACAACAACGAGATGTAAGCAAGGAAATCTGACTGCAGTACAGGTAAATTATCCCCTTTTCATATGGAAGTGCTTTTGATGTAAATAACGCAGAACAATTCAGTATTCCAAACACAAGTAATGAGTGGAGTGCCTCCAGACTATTGTTCCTTCACCCACACACAACTAGAGTGGATTTGCATGTCTGTTTAGCATTCAAGATCTATACTTGTATGATTTAACTAGTTTGgtcccccccctctccccaccaCTCCTCTTTAAAGTCAACTATTTTTCACAAAGCCATAAATGGAAGACAACAAATCACACCATTCTGGGAAAGCGTacatagttgtatttttttcttaatacagTGCCTAAACAGCTGGGCAGGGGTTTAAGAAATCTGCCcccatttttgttgttgttgtaacaACTTTGCCATTGTATTGTTTCAGATGCCAACTTTTCTGAATCGACGTAAATACGATGCTGTACCTTTTAAGGCTTGAACAATTCAGACAACTTTTACAAACGATAGGTGTTACCAGTGATTTGCCCGCACTGCCTAAATATTTTTGTGGGGCAAGAGGCATCCTTTGTAATTATTTGGAGGTGctgatttagaaaaacaaaaagaaaaaaagattttcaaaaGATGCTGGTCATCACAACTCTCGATGTATGCTGTCTGGTGTGGCTTGGGTTGTCctttactgcactgtatatcTGCTGTGTGCTGAATAGGCAAGAAAAACCAatgattaattcaaaatatgcTGT
>TU35066
GTCTAAAGCAAGCGGGGACAGCACTCACCCCTCGCAAAACGAGCACAAATCATGGCCTCCCCCCTCTTCCGGTTGGACTGCGGAGCGGAAGCCGCCGCGTCACATGAGCAGCGCATGCGCGGCGGAGCCTCAGTGCTGCACAGGGTCGCCGCCGAGACAAGATGGGTGTCGAGATCGAGACCATGACTCCCGGAGACGGAAGGACCTTCCCCAAAAAAGGGCAGACCTGTGTGGTGCATTATGTCGGTTCATTGACAAATGGACAGAAGTTTGACTCATCCCGCGACAGAGACAAGcctttcaagtttaaaatggGAAAACACGAGGTCATCCGAGGGTGGGAGGAAGGAGTTGTCCAGATGAGTGTTGGTCAGAGGGCCAGGCTCACCTGCTCACCGGATTTCGCCTACGGATCTAAAGGCCACCCTGGCATCATCCCACCCAATGCCACTTTGATTTTCGATGTGGAACTTCTAAGCCTGGAATAAAGCAACCCGTTATGTTGCCTCCTACCTTGGGAACATGGAGAAAGCTAGGAGAGTGTGCACTTGAACATAAGGGGCTTGTCTTATAGTTCCACTTTGGTCACTATCTATCCATATAGAAAAGTATGTGTATCATCAGTgagagctttttgtttttctttgttttttacacaCCCTTTTAAACTATGGGCCATAACCTTAAAAACCTCGTGACGTTCTtaatcttgaattgaattgtgcttttctttgtcctatttttttttttggtgtagaATAAGTTGTGCATGATCAAGCATTTACAAATATACCaatgaaaagcagcagcaggaaaATTTTAACCTGGTTGAATCTAAGCAGTAGATCTGTGGGGTGCTACAGCCATGAGACCAACACGATGTTTAAACTGAGATggggaaataaaaagcacagtCTTAAACTTTTCACTCTTTGCTCCTGGTTGTTCTTGAGACGAGGATATTGCACCAAATGTACTGTGCAGTCTCTTAGGAATTGAGAGAGGTTGCTTTCattataatagaatatatttggTTAGTAAAACAATAGAGCCACTGTTACTACTACAACAACGAGATGTAAGCAAGGAAATCTGACTGCAGTACAGGTAAATTATCCCCTTTTCATATGGAAGTGCTTTTGATGTAAATAACGCAGAACAATTCAGTATTCCAAACACAAGTAATGAGTGGAGTGCCTCCAGACTATTGTTCCTTCACCCACACACAACTAGAGTGGATTTGCATGTCTGTTTAGCATTCAAGATCTATACTTGTATGATTTAACTAGTTTGgtcccccccctctccccaccaCTCCTCTTTAAAGTCAACTATTTTTCACAAAGCCATAAATGGAAGACAACAAATCACACCATTCTGGGAAAGCGTacatagttgtatttttttcttaatacagTGCCTAAACAGCTGGGCAGGGGTTTAAGAAATCTGCCcccatttttgttgttgttgtaacaACTTTGCCATTGTATTGTTTCAGATGCCAACTTTTCTGAATCGACGTAAATACGATGCTGTACCTTTTAAGGCTTGAACAATTCAGACAACTTTTACAAACGATAGGTGTTACCAGTGATTTGCCCGCACTGCCTAAATATTTTTGTGGGGCAAGAGGCATCCTTTGTAATTATTTGGAGGTGctgatttagaaaaacaaaaagaaaaaaagattttcaaaaGATGCTGGTCATCACAACTCTCGATGTATGCTGTCTGGTGTGGCTTGGGTTGTCctttactgcactgtatatcTGCTGTGTGCTGAATAGGCAAGAAAAACCAatgattaattcaaaatatgcTGTTGCAATAAAGTGCTTTCTACCAGCTTTGGAAAACGTGTACGAGTGATTCCTTTCATCTTCTACAGCAA

Function

symbol description
fkbp1ab Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; optic vesicle; and retina. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A).
fkbp1a Enables several functions, including FK506 binding activity; activin binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including SMAD protein complex assembly; regulation of protein metabolic process; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in Z disc; cytosol; and membrane.

NR:

description
FK506 binding protein 1-like

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008036 False 1665 mRNA 0.41 5 40241473 40247170
TU35066 True 1894 TUCP 0.43 5 40241312 40247238

Neighbor

gene id symbol gene type direction distance location
AMCG00008038 LOC105906738 coding upstream 3602 40215915 ~ 40237710 (+)
AMCG00008037 nsfl1c,LOC106566439 coding upstream 27329 40208137 ~ 40213983 (+)
AMCG00008035 NA coding upstream 68476 40171697 ~ 40172836 (+)
AMCG00008031 NA coding upstream 126972 40101186 ~ 40114340 (+)
AMCG00008030 NA coding upstream 165034 40075226 ~ 40076278 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding downstream 4974 40252212 ~ 40267152 (+)
AMCG00008047 LOC104946955 coding downstream 322594 40569832 ~ 40578430 (+)
AMCG00008045 NA coding downstream 361374 40608612 ~ 40624271 (+)
AMCG00008048 LOC107747493 coding downstream 385406 40632644 ~ 40647166 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 401905 40649143 ~ 40661046 (+)
G27973 NA non-coding upstream 181107 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 237612 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 636484 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 950091 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 974639 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 30176 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 504237 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 511460 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 514028 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 730416 40977654 ~ 40978428 (+)
G27974 NA other upstream 181926 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 406360 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 648901 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 695705 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 736935 39503079 ~ 39504377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 416734 40663972 ~ 40721745 (+)
G28395 NA other downstream 1745621 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2166394 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2858475 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2897567 43144805 ~ 43156072 (+)

Expression


Co-expression Network