AMCG00008037 (nsfl1c,LOC106566439)


Basic Information

Item Value
gene id AMCG00008037
gene name nsfl1c,LOC106566439
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40208137 ~ 40213983 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008037
ATGGCGGATCGAGAAGAGGCGGTGAGGGAGTTTGTTGCCGTTACAGATGTAGACGAGGAGCGGGCCCGCTTTTTCCTGGAGTCTGCCGGCTGGGACCTACAGCTCGCCCTGGCCAGCTTCTTTGAAGATGGCGCTGATGATGACATAGTCACCCTCCCTCAGCCAGAGGGCAGGTCTGTCTCGCGCCCCACAGCTCCAAGTGAACACAGAGTAACTTCCTTCAGAGACCTAATGCATGAGGATGAAGAGGAGAGTGATGAAGAAGAAGGACAGAGGTTTTACGCCGGGGGCTCGGAGAGGAGCGGGCAGCAGATCGTGGGCCCCCCCAAAAAGAAGAGCTCCAATGAGGTGGTGGAGGACCTGTTCAAAGGAGCAAAAGAGCACGGTGCAGTGCCCGTGGACAGAGCTGCTAAAGGACCTGGGGAGTCCAGCAGGGCAAGACCGTTTGCTGGCGGAGGTTATCGTCTCGGCGCCGCCCCGGAAGAGCAGTCTGCCTATGTAGTAGGAGAGAGGAAGTCCTCTGAAACAGCCCAGGATGTGCACGTGGTCCTGAAGCTGTGGAAAACTGGCTTCAGTTTAGATGAGGGTGAGCTGAGGAGTTACTCCGACCCTGGCAACGCTCAGTTTCTCGAGTCCATCCGCAGAGGGGAGATTCCCGCCGAGCTGCGACGGCTGTCCCGAGGCGGCCAGGTCAACCTAGACATGGAGGATCACCGTGATGAGGACTTCTCCAAACCCAAGACTGTGTTCAAGGCCTTTGGCGGGGAAGGGCAGAAGCTGGGGAGCGCCACTCCCCAAGTCGTCAGCCTCAGCTCGGGGGTCATGCTGGCAACCAGTGAGGCGCAGGCCAGCTCTGCCGTCACCCTGAACGAGGCAGAACCTGTCACCAACATCCAGATCCGGCTCGCCGACGGGGGGCGCCTGGTCCAGAAATTCAACCACACTCACAGAATTTCTGATATCCGCCAGTTTGTGGTCAGCGCTCGACCCGCCATGGCAGCCACCGAGTTTGTCCTCATGACCACCTTCCCCAACAAAGAGCTCACGGACGAGAACCAGACGCTGAAGGAGGCCAACCTACTGAACGCCGTGATCGTCCAGCGGGTGAAGTGA

Function

symbol description
nsfl1c Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in Golgi stack. Predicted to be active in cytosol and nucleus. Orthologous to human NSFL1C (NSFL1 cofactor).

NR:

description
PREDICTED: NSFL1 cofactor p47

GO: NA

KEGG:

id description
K14012 NSFL1C, UBX1, SHP1; UBX domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008037 True 1113 mRNA 0.59 9 40208137 40213983

Neighbor

gene id symbol gene type direction distance location
AMCG00008035 NA coding upstream 35301 40171697 ~ 40172836 (+)
AMCG00008031 NA coding upstream 93797 40101186 ~ 40114340 (+)
AMCG00008030 NA coding upstream 131859 40075226 ~ 40076278 (+)
AMCG00008027 NA coding upstream 134027 40062721 ~ 40074110 (+)
AMCG00008024 NA coding upstream 232286 39972563 ~ 39975851 (+)
AMCG00008038 LOC105906738 coding downstream 1932 40215915 ~ 40237710 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding downstream 38229 40252212 ~ 40267152 (+)
AMCG00008047 LOC104946955 coding downstream 355849 40569832 ~ 40578430 (+)
AMCG00008045 NA coding downstream 394629 40608612 ~ 40624271 (+)
AMCG00008048 LOC107747493 coding downstream 418661 40632644 ~ 40647166 (+)
G27973 NA non-coding upstream 147932 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 204437 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 603309 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 916916 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 941464 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 63431 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 537492 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 544715 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 547283 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 763671 40977654 ~ 40978428 (+)
G27974 NA other upstream 148751 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 373185 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 615726 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 662530 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 703760 39503079 ~ 39504377 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 27329 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 449989 40663972 ~ 40721745 (+)
G28395 NA other downstream 1778876 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2199649 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2891730 43105713 ~ 43108242 (+)

Expression


Co-expression Network