AMCG00008038 (LOC105906738)


Basic Information

Item Value
gene id AMCG00008038
gene name LOC105906738
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40215915 ~ 40237710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008038
ATGGGGGAGCCGGCAGCACAGAGCTCAGGACCTCGTGAAAACGTGCTGCTTGCAAAGGGGGACTCCGATCATAAAGCCGTTAAGATGCCCCTGTGCAGGAAGGTCTGCTATGCGGTGGGCGGAGCTCCTTATCAGATGACATCCAACGCCATCGGCTTCTTCATGCAGATCTTCCTGTTGGATGTGGTGCAGACGCATGTGGGATGTGTGACTCACAGACACCATAAAAGCTGTAAAACAGTGCGGTGCTCTCAGCAGCCCACGCCTCCTCTGACCAGCCCTCACCTCAAGGCGGTGTTCTCCATGCCGTTCGGCGTGTTGTCCTACATCCTGCTGTGGTACACTCCACAAGACACCATGTCCGCTGGTTTCAGCTTCACATGGTACTTCACCATGTACTGCCTCTTCCAGACCTTCATGAGTATTTATATCCCAACCCTCGCCATCATCGCCTGTGTCCGCAGTAATCTCCCCGTCTACGTTCTGATGTCCATCAGTGCCGGGTCCAGCCTGGCTGCCCTGTACCTGCTTCCATGGTCCATGCTGCCAGATGTGGTGGATGACTTCAAGGTGAAGAACCCGACCTGCAAAGACCTGGAGCCTCTGTTCTACTCCTGCTACGTCTTCTTCAACAAATTCGGGGGTGGGATGTCCCTTGGCATCTCCACTCTAGCTTTACATTTTGCAGGGTACCAGCCAGGCGCCTGCAAGCACAACGCGGCGGTGATCACCACGCTGAGGGTCCTGTTTGCCCCGGTCCCCATCGGCCTGCTGCTGGTGGGCATGCTCTTATTCTACTTCTACCCCATCAACGAGGAGCGCCGCCAAGAGCTCAAGAAGGAGCTGGAGAAAGCCCAGGAGATGGAAGAAAGGACAATGGATGTTTTTAGTCTTAGCAAAGTGCAGGGGTTAAACTGGCCCGGGGCCGTCCGGGGCTGA

Function

NR:

description
PREDICTED: sodium-dependent lysophosphatidylcholine symporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008038 True 939 mRNA 0.56 9 40215915 40237710

Neighbor

gene id symbol gene type direction distance location
AMCG00008037 nsfl1c,LOC106566439 coding upstream 1932 40208137 ~ 40213983 (+)
AMCG00008035 NA coding upstream 43079 40171697 ~ 40172836 (+)
AMCG00008031 NA coding upstream 101575 40101186 ~ 40114340 (+)
AMCG00008030 NA coding upstream 139637 40075226 ~ 40076278 (+)
AMCG00008027 NA coding upstream 141805 40062721 ~ 40074110 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding downstream 14502 40252212 ~ 40267152 (+)
AMCG00008047 LOC104946955 coding downstream 332122 40569832 ~ 40578430 (+)
AMCG00008045 NA coding downstream 370902 40608612 ~ 40624271 (+)
AMCG00008048 LOC107747493 coding downstream 394934 40632644 ~ 40647166 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 411433 40649143 ~ 40661046 (+)
G27973 NA non-coding upstream 155710 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 212215 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 611087 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 924694 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 949242 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 39704 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 513765 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 520988 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 523556 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 739944 40977654 ~ 40978428 (+)
G27974 NA other upstream 156529 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 380963 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 623504 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 670308 39540220 ~ 39545607 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other upstream 711538 39503079 ~ 39504377 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 3602 40241312 ~ 40247238 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 426262 40663972 ~ 40721745 (+)
G28395 NA other downstream 1755149 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2175922 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2868003 43105713 ~ 43108242 (+)

Expression


Co-expression Network