AMCG00008039 (LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346)


Basic Information

Item Value
gene id AMCG00008039
gene name LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40252212 ~ 40267152 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008039
CTGATTATAAATATCCGTGTGACACAGTCAGCTGATGCGTCAGGCGGTGACGTCACGCCGTTTAGCAAAGCCGGAAGTGGGCTCAGGGTTACTTACGGCAGGCAGGGGATCGGGATCGGGATCGtgttcagtgttgtgtgtgtgttcagtgttatTCCACACTTTTACCCGCTTGTGATTTCGCAGCTCTTCCTCGATATCCCCCCAGCAGTTTGAAGcaaGATGTCTCTGTATCCTTCCCTCGAGGACCTGAAGGTCGACAAGGTCATGCAGgcTCAGGCCAGTTTTGCGGCCTCTACCTCCAGGCCGGCCATCGCGGAGGAGGCGTCTGAGCAGATGTCTGCTAGACCGGAGACCATGGGCTCAAGTCTGTATCCCAACCTGCAGGAGCTGGGCGACTACATGGGGCTGAGTCTGAACAGTGATGAGGTCcagaggaacctcgccatggtGCCTATGGGAGACAATcGGGTGGCCACGGTGCCCTCTGCTCTGGGTGGGATGGTCTGCCCCGTGACTGGGGGTGACATGGGCGTCCGGAGGGCCGAGATCAAGCAGGGCCTGCGGGAGGTGATTCTGTGCAAGGACCAGGATGGCAAAGTGGGCCTGCGACTGCGCACCATCGACAACGGCGTGTTCATCCAGCTGGTCCAGGCCAACTCTCCCGCCGCGCTGGCCGGCCTGCGGTTCGGGGACCAGGTCCTGCAGATCAACGGGCAGAACTGCGCCGGCTGGAGTCTGGACAAGGCGCACAAGGCCCTGAAGGCGGCCGCCGAGTACCGCATCGAGCTAATCGTGCGAGACAGGCCTTTCCAGCGCACCATCACCATGCACAAGGACAGCTCCGGTCACGTGGGATTCATCTACAAGAACGGGCGGATCACCTCCATCGTTAAGGAGAGCTCCGCCGCCCGTAACGGCCTCCTCACTGACCACAACATCTGCGAGATCAACGGGCAGAACGTCATCGGGCTGAAGGACTCTCAGGTTAAGGATATTTTGACCTCGGCCCCGACTGCCATCACCGTCACCATTATTCCTAAATTCATTTATGAACACATGGTGAAGAAAATGTCCTCTGGGCTGATCAGATCGGCCATGGACCACTCTGTGCCTGAggtgtgaggaggaggaggaggaggagggtggaaCCGCCTGACCCCAAGACATCTGAGCAttccagcattttgttttgtttatcccAGTTTCGTTGCGTCTCTTCCGGTATCTAAATGCTGTTCTTATTACATGCTGTTCAGTTCTACTACAATCATCACGTCTTTTGAAGTTGTTCTACCTTGATTCTTAGCTgcttattattagtgtttttgtatttttttcagtcttAGATTATAAACCGATTTATGTTTTGatagtgttttttatatatatgatgaTTCAGTGCTTTGCTCCTTTAACGGTGACCATCTCTGCTGTTCCAGTCAGGAGCTTCCATACAGATACACTGTCGCCTTCAGTGTCTTTCCACTCATTTGAGCCACCTGTCCTGGAAGCAAAATGATCTGTTGCACCAATGAGTGTATAAATAACGAAATACATTCGTCAATGCATTAAACCAATAGTGGTTTCAATTGATCATGCACACTTTGCATTGGTGGTGCAGACATGAAGAGATTTTCCAGAAGTGATTCTGATGGAGGGTGTTTTGAGGAGAGGCTAGGCTTCCCCGATTGAGAGCTGCAGTAATTAGTAACGTATGGATGAGAATTGTGAGGTAAACGGATCTAATGTAAGAGCCTggaaatagaataaaatatggAGGATGTGCTAATTATACATCTGCAGAACTGCAGCTGAATAACATTTATTCTGTCTAATTGTCTAAGGAAAATGTAAGCCTTTACAGATGTTATACTtagtgttatatatttttggattttgttttaacattatgTAACCAGTACTATCTAATAACGCAGGGTTAAAAGCAATTTTGCTCTTCTACAGTGTATTCGAATCTCTtgatttatatacaaatgtttaatcttTAATAATAAAGAGTACACTCCTGGTCCCATTGTTGCGCTTTGAATAAGTGTCAATTATGAATTGCGGAGGAGTGACCTGAGacttttgacctttgacctgagcTGTGGGTTTAAACAGTTGGCAATTTGAAATCCTACCAGTGTAAGAAAAGggtgtgctttaaaataaaacaaatactactttttatgtatttggaaATCGGTTTCAGAGTCAAATTGGAgtctggaaaataaatcttgGAAACACAGACTTCGAAACAGACGACCGAGACTGGGACTTCTGGTAAATGTGttataattcttttttttttttttttttttttacaaattaaaatgtccataatTTCGTTGTCGATGTTTAAGTTGA

Function

NR:

description
PREDICTED: syntenin-1-like

GO: NA

KEGG:

id description
K17254 SDCBP; syntenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008039 True 2376 mRNA 0.47 9 40252212 40267152

Neighbor

gene id symbol gene type direction distance location
AMCG00008038 LOC105906738 coding upstream 14502 40215915 ~ 40237710 (+)
AMCG00008037 nsfl1c,LOC106566439 coding upstream 38229 40208137 ~ 40213983 (+)
AMCG00008035 NA coding upstream 79376 40171697 ~ 40172836 (+)
AMCG00008031 NA coding upstream 137872 40101186 ~ 40114340 (+)
AMCG00008030 NA coding upstream 175934 40075226 ~ 40076278 (+)
AMCG00008047 LOC104946955 coding downstream 302680 40569832 ~ 40578430 (+)
AMCG00008045 NA coding downstream 341460 40608612 ~ 40624271 (+)
AMCG00008048 LOC107747493 coding downstream 365492 40632644 ~ 40647166 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 381991 40649143 ~ 40661046 (+)
AMCG00008049 LOC107707748,LOC107747492 coding downstream 430872 40698024 ~ 40709849 (+)
G27973 NA non-coding upstream 192007 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 248512 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 647384 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 960991 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 985539 39266422 ~ 39266673 (+)
G28032 NA non-coding downstream 10262 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 484323 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 491546 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 494114 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 710502 40977654 ~ 40978428 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 4974 40241312 ~ 40247238 (+)
G27974 NA other upstream 192826 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 417260 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 659801 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 706605 39540220 ~ 39545607 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 396820 40663972 ~ 40721745 (+)
G28395 NA other downstream 1725707 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 2146480 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2838561 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2877653 43144805 ~ 43156072 (+)

Expression


Co-expression Network