AMCG00008044


Basic Information

Item Value
gene id AMCG00008044
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40394078 ~ 40415758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008044
CTTCTGCAGGATGAATTCTCAGAAGCTTTCTGTCTCAGCGCTGCAGGAGTGTTTGGTTTAACTGCTACGAATCCCGTTTTTGCATCCAGTGCATGCAGTGCCCCACTGCCAGTGACATTCAGCAACTGACTCCTGAACAAGTAAGAACAACAGAGCGTGCTCAGGAGGCAGCTACGGCGGAAACTGACTGCTTGGACTGGCAATGCCCAACCTCCTGACCACAGACACCTCCTTCAGCTCGAAGCAGGAGCTCCTCGACCTCAATGACTGCCCTGCCAGTGTAGGAGGCCTGCCTTTGGAGACCCCCAGCCCCGTGGAGTCCCAGAATGGCTCCGTGTGCAACGCCCTGTTGGACTCAGAGtctcccacccccaccacagAAGACTCCATCTGCAAAGTGCCCTCTTCTCCAGAGAAGCAATATGAAGCAGGCGGACCACATGGAATCAAGTTCGTGCCCTCGGAAACCGAGCAGCTCTGTGGATGGGGAGCTCTCACACCAGGGTTCATGCAGGCCTTCAACACGCCCAAGTGGATGCTATTCTTCCTCTGCGTGGCATCCTTCCTGCAGGGCATGATCGTCAACGGCTTCATCAACACTGTCATCACCTCCATTGAGAGGCGCTTCGACCTGCGGAGCTACCAGAGCGGTCTCATCGCCAGCTCCTACGACATCGCCGCCTGCATCTGCCTGACCTTTGTGAGCTACTTTGGTGGCACAGGCCACAAGCCCAAATGGCTAGGCTGGGGGGTGCTGGTAATGGCGCTGGGCTCCCTTGTGTTTGCCCTGCCTCACTTCACCACAGACAGCTACAGGGTGAGCGTACCTGAGCACACCGGCCTCTGCTCTGACAACCAGACACCGTGCAAGGATGCCAGTACCAGCCTCTCCAACTACAGGTACATGTTCATGCTGGGACAGTTTCTGCATGGCATGGGAGCCACTCCTCTCTACACACTGGGCGTCACTTACTTGGATGAGAACGTCAAATCCAATTACGCACCTGTCTATATTGGCATTTTTTACACTGCTGCTATTGTGGGTCCCGCTGCTGGATACTTGCTGGGGGGTTTCTTCCTCAACATTTACACTGAAATCCATGAACCGACGGAGCTGACCCCTGAGAACCCTCTCTGGGTGGGCGCCTGGTGGATCGGCTTCCTGGCTGGCGCAGCTGCTTCCCTGTTAGTTGCCATCCCGATCCTGGGCTACCCCAGACAGCTGCCAGGCTCCCAGCGCTATGTGGCGATGCGGGTTTCAGAGGCTCATCAGTTGAAGGACGGCAGCCAGGAGACGGCATCTGACCCACAGTTCGGGAAAACCATGAAGGACATGCCCAGGTCAGTGTTAATGCTGCTCAGAAACCCCACCTTCATCTTCCTATGCTTCGCTGGAGCCACTGAAGCCACACTAATCGCAGGCATGTCCACGTTTGGGCCCAAGTTCCTGGAGTCCCAGTTTAGCCTGAGTGCCTCAGAAGCTGCTACATGGTTTGGTTACATGGTGGTGCCAGCAGGGGGAGGTGGCACCTTCCTGGGCGGCTACATTGTGAAGAAGCTGAACCTGCGCTGCCGAGGCATCATCAAGTTCTGCATGTTTTGCGCCGTCATCAGTTTGATGGCCATCTTTGTATTCCTCTTCAACTGCTCCAACACGCCTGTGGCCGGGGTCACCACTCCGTACTTCAACAGCTCTGCAGGGCAGTGGACTCCTAATCTCACGGTCAGCTGCAACCTGGGCTGCCACTGTGACCAGGAGCTCTACAGCCCTGTGTGTGGGGCCAACGGCATCATGTATTACTCCCCCTGCCACGCCGGCTGCCACACCCTCAACCAAACCCTCAGCACGTCCGGCAAAAAGGTGTACTCGGACTGCAGCTGCATCGTGGGAAGCCTGTCCTCCTGGGAGATGGGGGTCGCCGAGCTCGGGAAGTGCAGTTCGTCCTGTCCGTACATGCCAGTCTTcctcatcttcatcttcattgTCATCCTCTTCACCTTCCTCTGCAGCATCCCTGCTCTGACAGCCACGCTGCGGTGCGTTCCTGACAGCCAGCGCTCGTTTGGCCTGGGGATCCAGTGGATCGTTGTGCGGACACTAGGAGGAATCCCAGGTCCGATAGCCTTTGGCTCAGTCATCGACATCTCCTGTTTGTTGTGGCAAGACCAGTGTGGAGAGCAGGGCTCCTGCTATCTGTACCAAAACTCTGACATGAGCCGATACACCCTGATAGCTGGTGTCATCTACAAGCTTCTGGGAACACTGTTCTTCCTGCTGGCCGCTCTGCTGTACAAGCCTCCCCCCGAGTCTCCGCAGAGCAACAGTGAGAACACAGACAACGGGCCTGGGAACAAGGATGAGATGGACCTGCCGGTGAAGGAACTACCCCAGGAGATCCTTCACTCTGTAAATACCAAGCTCTGACCTCATCATCACATTTGTCACCACTCCATCCACCAACCCCTGCCTGCGATTCCCCCCGCACACCCACTCCCATTCCCACCATCTTCTCCACCCACCTGGGCAGACTGAGGTTTGGCTAGGAAGGACCATGCTCAGCTAACAAATCTATGAAGTCAAAAGAATTTGGAATTTGATCAGCCAAGGGTGACCGACTTCCTAGTGAACAAAATTTAGCCAAACACGAAAGGCTCACTGGAGTATTGAAGTATTTACAGACTGCAGAACCACTGACACTGTTTGTTGCCAACCATCAGCATGTCTTTTGCTTCAGAAGATTGAGTATCGTCAGTGGACATATATAACTGCAATGAAGACTTATGAAAACTACACTCAGATGCCTTTACTACAGAATACCTGTAACTTGCTCGATGGTGACTTCAGGATTACATTCAAATGAACAAAGGCTGAAGTCTCCAATGCCAATTAACAGACATAAGTGTAACATTTGATCTGTAATTATCTTTACTATCTTGGGCTGTTGGTTCAATATCAACAGCTGACCCTATGAATGGAAAGCAGTGTGGTTGCCAGTCCTGACTGAACAGGACTTAAATTCAtattatggtttgttttattaccTTGAACATATTTACTTCTATGACTCTTCTACAATTAGATGTATATACTGATGCATTTTGGTAAGCACTTGCTTCTTGTACCCACTATAAAAGATGAACTAATAATGCTAAATATGTATCGAACCTCTGTTCATCACAGACTGAAAGAGTCTTTCCCCATGCAAATTTGGATTATAAACAATTTCTTCACTTGCAAGACaattcagttatatatatatatatatatatatatatatatatgcttgtcAGACATCATTTAAAATCCATTCCAAGTCTGTTGTTGATGTAAAACCACCACAGGGGTCTTCAGTGTGCTAAAATGGAGTGAGGTATCCCACAGATGTTCACGGTTTACAGGTTTTGGATTTCAGTATCCTATTAGAGAAAGGGCTTCTGAGGACACCAGAGGCTATGGGCATATTCCtttgtaaatttgtttttagtttccaGAAGCCCTCAACCAGTCTGCACTGAGAGCTAAAGAACTGATGGCTTCAATTCAGAGAATAGAGTTTCCAGGATATCACCAGGGGACCCCGTTccaatcaaaaccaaaaatgttaaaacttgTGAAAactagaaaataattattctaatCCTCAGCAGGAACAGCAGTTTCCTGCAAtgaccaaaaaactaaataagtgTATAATTGAATTTGAGTTTCAAACTAAACCAAGCAGAATTTGCATGCAAGTAATTCTCCTTCAGGTTTCCCTGTCTAAGAGCCAAGGCCTGAGGGAGACCGAAGTAATGGTTTGTGAACAGATCCATTTGAAACAAACCCCAAATTATGAATTGATTGAAAAGGGTTGACCTATCCTATCACTGTGGAATACAGCTCTTCCTCACAATTTTCTCCTTCTTGAAAGTGCATGGATCCCATCTTCAGGAGCCAGTTGCCAAAATTAGATTGTAAGAAGTGGAAATGTAAGAGTGTGGGAAATCAGTAGAACGATGTTGCTTCAAAGTATTTATGTTAATagagtatttatttacagtatttatttataggtgCCCTACAAACACTGCACAACTggaattattttagtttttcttccttttcatttaaGAAGCATGTCACAGAGAGACCATCACAGTTCACTCGAATCTTTGGTCTGAAACAACCATTAGACACCACCATGGTTTCCAAAACCATCAATTCATGTCCACAAATATGAAGGAAACCGAGATCAATCCTGCACTCAGAGCATGTTCTTGTAAAAGCACTTTGTCACAGACTTTGTCTACATTCTCAGACTGTGATTGTGAAACCTTTATAATAATCAGTTGGCTTCGCAGTTATTTTTTACAGGAACATTTCTGGCAGAGAACAGAGCCAATAGATGAGGAAATGCTCAACACACAGTTGCTAATATCTTCTCTAATAAAGTAGCACACACAGGTGCACACAGAAAAACATACTCAATCAGATTGTATTTAAACCGTAACACCAGTTTCATAAACCCTGTCATTGTCTTTGTTTAGTGCACATTTTATTcaattcatacattttgtaaacgGTATACCTGAAACTTcagtacaaatgtttttattaactgGATACTATTGtggtttaaattttaaaatgttaaaagttaagatattttattatttttgtattgtatcaaCACGATATTTTGAATCTTAATCCACAGTCATACATGTGTGTCATTTGCACGTATTCATTCCTCCTGCATGCTGTTAATGTTATGGCATGTGATCCTGTGCCTGTATGTACAAAACTTTTCAGACAGAAGACAACCCATCATGCATAACAGATAATAAAAAAGAGGAATCAAAGTCAGACCAGATTTATTTGCAAACAAAGTAGGGCAAACTGTTTGGAAACCGATACAAAACTAATTAGGCTGTTGTTCTGAGCAATACAGTAACCCTTTCTTTCCATTCCACtaagattacattttacattacagattacatttttctggAAACCCTTTTAATATACCATAACAAATCATAAAATTGAACTCTCAGATAAGACTCTTTAACGCCTCATgtttacttgtattttaatatttctgaaatgtttttttttttgctacccATATTACAAAAAAGCTGTCCATACTGGTGGTACTGGTACTGGTACTGAAGCCTGAGACTGGTGACTCTCTCATACTGACCAACAGACCAGGCAATGTAGAAAACAGGCTTGGCCATGTGATAGGAAGGACAGCATCGCCTTGACACTGGGAGAGCCTGCCCTCTTACTGGCAAAGGCAGCCGTAGTACAGTCCTGTGCATCAAGGGTTATTGCCTTCTCAGCTCTAGCGCCCAGCAAACCTCATCCATCAAAGATCCATCCTAAATAGAAGCTGTTATTGTCTTGGCTTCCTgagttttaatttccttttcctgACACTGAAGACAAATATGAGGAtattggggattttttttaataaaaaataaattggtgcTGATCCAATGTAGTTTCCATTTTCTGCACATTAAGACCAAATGCTGTTAACAAGTTCAAGgcaaagatttttttctttacataaaatgaaaccttttactgaacaaacaaagaaactacaacaaaacaacaaaaactgcttAAGTTTCACACTATCTTAAGGTTAGGTAGGAAATACTCCATTATGGATACCCAATTCTATACTCTGAAGAAGATCCTCACAATCATGAGAGCTCACATGCAGGTACTGCCTGGGCCACCCAAAAGATTTAAGACTTTTAACTTGAAATGCTCTTCAAGCATGCTTTCATTTTGTGGGGCTGTATTGTTATGTAGGCTAAGTTTATAGAAGGGCTTAGAGCTCCCTAGATCAAggcacataaaaaataaataaaaaattaagtcCATGGAGACAAACAACAACTAACAAGTCCAAAGGAACTGGCCGCGACCGACACTGACATCACAGCACTGTTGATGCACTAAGTGAGAGTTTCTCCATTTGTTTCTTGTAGACGTGCAACATTTGAGATGGAAAAATTGCACCAAATTAtaaaaaactctctctctctctctctctcctgaatgTAGTGCTAAAGGAGCTCGTGTCTGGGCAGTCAGAGTTGGCCATGGTAACACTCGTCGGGTCCCCGACAGGCCAGTGTGGTCACCACAGCCAACGAGGCCGGTCTTGGTCAGATCCTGCGGGCCCAGCTGACTCATCTCTACAGTGCGAATGAACTCCCAGCCCATGGGAACTTGCAACACAGAAATtaagtttagtttaaaaaaaaaaagagaatgtgGAAAGATTTGTATTCTATTCACATGATCAACTCAACCCCATTGCTTGTTCTAAAGCATGATTTGTCTTTTGCCATTTTGGAATTTTTTTTGGTTCaggattaaaaacatttaacatttaatgagTGAGTGAGATCCCATCTGAGCCAAGACATTCCAATTctgttgttttgctgttgtacaagtatacacaaaaaaatacaaaaaacgcTACATAATTGCCTTGATGACTGCACAACGAAAGGGCTGTACTGCATATAGAAGAGATGACTATAAATATATGCTGTTTTCTAAGACTCTTGCTTTGAGCAGATTAATTGTAATGGGAACAGCtgcatctatttttttttagctcTGTGTGAAAACAACCTGCTGTGAAGAGCACAAGGCTATAGCAATGCAGGCAGTGCAGGACAAACTGATGAACTGTAGGGACTCCACTACTGAGAGGGTTTAGTTCACTGCTCAAAGTTGAAAGCCACAATGATTTCCAAATCAACGCTAAACTGTAAGTTTAGATGTACAAATACGTGCGAATAGACGGAGCTCTCGTTGCACTCCAGCGGAACAGCAGGTTTTCATTCCTATTCACCCTGGATAATGGTGTtggttaagaaataaataaataatatagtacAGCTGGGGTAGAGTTTCCCACACTGGTCCTGGAGTGCTAGGGAAGTCTCTGGTTTCCATTCCAAACAAACCCTCAGTTACACTCCTGAACCAAATCTTGGCTTAATCAGATGAGATCTATAGGAATCTCTTCACCCTTGGTTGATCAGGCCTATACAACCTGTAGACCCAGGACCTGACAGGACATGGGTCCATTTACTAATGTGTTTGCTTACAGACCCTTACACTATTAATGGACATGAGAGGCACTATAGTTCTGTGATGAAGCTGATCTACATCTTGATTGCTTCTGAAACTGATTAGGCACTTTAAGCGCTGTTCGTAAACTTTTTGAatatggctgttttttttttttaaaggccgTGCCAGTTTCCTCTGATGAGGCAGAAAAATGCTATtcaaaaataaagtgtgtatCCTCCTTTTGACGTCTGTGAGTTGTTGAATGTGGCTGTGGCTGTTCAGTGTGAGTGTTTTATCCAGATGTGTCCGTTTGATTGTAAAAAGTTGTTAC

Function

GO: NA

KEGG:

id description
K14354 SLCO4A; solute carrier organic anion transporter family, member 4A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008044 True 7436 mRNA 0.44 11 40394078 40415758

Neighbor

gene id symbol gene type direction distance location
AMCG00008041 NA coding downstream 37331 40328731 ~ 40356747 (-)
AMCG00008043 NA coding downstream 95410 40289650 ~ 40298668 (-)
AMCG00008040 NA coding downstream 167672 40221367 ~ 40226406 (-)
AMCG00008034 NA coding downstream 256626 40132543 ~ 40137452 (-)
AMCG00008033 NA coding downstream 292878 40092723 ~ 40101200 (-)
AMCG00008052 NA coding upstream 253912 40669670 ~ 40677744 (-)
AMCG00008055 NA coding upstream 340025 40755783 ~ 40769324 (-)
AMCG00008054 LOC105022343,LOC103467740,LOC106572463,LOC103385599,LOC106567217 coding upstream 404091 40819849 ~ 40828516 (-)
AMCG00008056 NA coding upstream 431244 40847002 ~ 40848749 (-)
AMCG00008053 NA coding upstream 452895 40868653 ~ 40875437 (-)
G28036 NA non-coding downstream 116431 40277163 ~ 40277647 (-)
G27949 NA non-coding downstream 547034 39842331 ~ 39847044 (-)
G27927 NA non-coding downstream 602594 39790546 ~ 39791484 (-)
G27904 NA non-coding downstream 629661 39763930 ~ 39764417 (-)
G27833 NA non-coding downstream 938220 39455040 ~ 39455858 (-)
G28095 NA non-coding upstream 212019 40627777 ~ 40632764 (-)
G28110 NA non-coding upstream 244123 40659881 ~ 40663760 (-)
G28119 NA non-coding upstream 248159 40663917 ~ 40667862 (-)
G28139 NA non-coding upstream 332548 40748306 ~ 40750443 (-)
G28190 NA non-coding upstream 567861 40983619 ~ 40984904 (-)
AMCG00008042 NA other downstream 105504 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 889486 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 1302183 39088557 ~ 39091895 (-)
G27720 NA other downstream 1338399 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 1344481 39032787 ~ 39049597 (-)
G28202 NA other upstream 600401 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 783731 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 990033 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 1431175 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 1667716 42083474 ~ 42089493 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_05193252_05204766 SLCO4A1 coding CI01000021 null 5192783 ~ 5205113 (+)