AMCG00008045


Basic Information

Item Value
gene id AMCG00008045
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40608612 ~ 40624271 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008045
GTTTCTCAGAGGTTCTGAGAGCTGCTTGGGTGTGGGACTGCTCCACTGTGGCTCTTCCCAGCTTCTCCTTTCCTTGCTCGTTTTGCCTTCCACTCAAAATCAAATGGAAGAGTGGACAAGCAATGGACATTGATATCAGGACAAACTGAGCAAAAGGAAGGTTTCTCCCTgAACAGGACAGGGGATCAGTGTAGGCAGTGTTTCAGACTTTGCATAGCTGTTACAGTACGGCTGCTCTCCAATTATGACCACAGACGGCTTTGATGAACTGCTCCACAGACTGAGGGACTTCCACGAGAAGGAGGTCAAAGGCTGGCAAGACAAAGTGACAGATCTGACCAAGGAAAAGTGCTGTGATGTTCAAAGAATGGATGAATTGTTCTCTAAAAACCAGCAGCTACGGGAACAGCAGAAGATACTCAATGAGAATGTCAAGCTTTTGGAGAACAGGCGAaCTGAAATATTGTACAGTTTGACCTTACTGCCATGGCTCCTTTCCAGACTGCGAGCGGGTTTGTGTGACCGCTGTACTGTGACACAGGACGTCGCCAAAAGAAAGCAACATGAATTCGAGACTTCTCAAATGCAGAGCTTGCAGCATATCTCCATTTTAGTGAACGAGATCAACATGctgaggaaagaaaacaagggACTGCTAGAGGAGCTGAAGACCCTGCGCTGTGTGCAGGGAGAGCAGAACGGCCGGCTGTCCAAAGCATCCACCCCAGAGAACAAGTCTGGATTCAGTCAGCTTCTCCACTGGAACGGACAGGAAGCtcatAACCCACAGAGAGTGTCCAATAAACTGCACAACACCATAGCAGTGATGGCACCAGCCCTGAGAGGGGACAATGTCCAAAGAAGTCCAGGGGTGGAGAAGAGACTAAAGAGTGCAGATGTGCCTGAGAAGTATGAGGCGGTCTCTCCACCGGTGGCTTTGAAGAGAGGGCCGTCTGAGGAGAAGCTGCAGCATCGTTTGGTCGCACCGGTGGCGTACCGGCCACACGTCGACAAGACCCAGAGACTCGCCTTCCACTGGCCTGTGGGGGAACAGCAAGACTGGGCTTTGAGGTCACAGGAGATGTTTGACGACAACATCCCAGTGATCGACTGCTACGGGAATCTGGTCTACCTGAAGGACTACCATCTGAACCCGAAGAGCACTGTGATGAAAAAGCCCGCACCGGAACTGTACTGGCACGACGGCAAGGTCACACTGTACCACGGGGCAACCAGCTCTCTGAACAGGATCCCCCCCATGAAAAGCACCAAAACGGAGGACGAGAGAGTCAGCCAAGGATTCAGGAAATTCAGCAGCAGCGACCTGAAACTGGAAAAGATTGTGGCTCCGTGCCAGAAGGCTGCCGACAAGCCGTTAGACCTGTCCGACCATGGGAGGTCCAAGCACAAGGGGGCAGAGGAGCAGCCGGAACTCTCCAGCCTCAGAGTTGGCTGCGAGGAGCTCTCGGGTCCCAAAGACTTGCACTCCTTCACTGCAGATCCACCACTCCCACCCAGCAGCCCCTCCAGCTCAGAGACCCGTCCCTCCCCGCCGTCCCATCAGTCTGCCGCCAACCACGTCTCCCAGGCGGGAGAGGTGAGAAATCCACAGACAAGTCCGgatcaaaatgaagaaaaaaaagaagaacatggAGAGGGAAATCCAGAGGAGTTTGCAAACACGGGGACAAAAGACCAGCCTATCGCAGTGGTCGTCCTGAAGGCACTCAAGACTGAATCCAAGGACCATGATTCATCAGACAGTGAGATGACGATTGATTATGAATCAGAGAGCAACCAGGAGCCGCACTCAGAAGACACACATTCTCCCGACAGGAAAGAGAAACGAAAAAGACGCCAAAGTGCCTGGAAGGAAGGTGAGACCCACGTCTTCTCAGAATTAGATCAGAGTAACGTTGAGCAGGAGGCCGACTAAAGAGAGAAAAGTAAGCGCGAGTGCTTCTGCAGAACACTGCGCATCCCCCACGGACTCGGGACAAGGTTGAGCGCCCAAGAGGTCTTCTTCAATTGTCCTTCTTTGGAATGTAAAGGACTCAGTGGATGAACAAAGACCATTTGGATGTTAAATATTGACACAAATCAAAAGAATTTACACATTTGATCACTGATAGGGGTTCAAGTAACTGTTTTGGGGGATATTCATACACACTGAACTCCGCATCCTTTCTCAGCTGGCCATGGCATTGTACGGTGCAAGACGCAGTTGAAATAACCCTGCTGTTAGATGACTAAGGaaaatataactgaaataaagtataaattaaactgtggCTTTTTAAGTAAGATTCAAGCAGTCTGGATGTTGTTTGGCAAATTAGCAACAGCTTGTAAAGAAATACTGTTAAAAGATTGTATTAAACAGAAGTTGAAAcaaatttgtatgtttttgctgTCCTATTCTAGGTGTCCAACTGTGGTACCAACTGCTTTTGAGTACGACGATATGGTTCTTCCTATATATGTCATGCAAAAAGCATTTTACAACAGTTGGCACTTgctaatattactttttttttcaagctttcatttttatcatattttgattgatttacttttaaatgtagctCACAACTAAATCTGTATCCTCTGCAAGATTGTGTTACGCAACAGATGATAAGCAATACTTGAAGGCTTCATGAAATCATCTTCAGATATGTCCCAGAGTAATTTACAAGTTTCTGAACACCGTTGGAGCAGAAGGCAGTCATAGCTGGACTGATGAATCCCAGCAGGAgaaacatacatactgtatggAGTACTGTGTGTCAGGCCAGAATAAATAACCCAATAAATGAATACTACACAGTAAATCTTTCATATAATTGTGTATTAGTATTCCCCTGTATAGAACCGTTGTACACCAAACTCCCAATCACTGCACTTTGATCTATAAGGATAGGAGATGGAGGGCAGCCTGCTGAAGCACATACGCAGACCTGGAGCCATTGTACTGTAGCATTGTCATGAAAGCTTGATATCTGCTCCTAAGTGATGCTGTAGTATCATGAGATTATCTTAAGTAAAGCCCTTATGTagtcatttttaatgtgtagAAAAACATTGTCTGTTTGTTGGTTTAGATGTAGGTATATgtctgttatttatgtatttgttcacattgtccaaaatatttttttaaagacgaagaaatatacacaaatacctCTGTAAAGTCTATGAAAACAACACTCTCTCTGCCTGTATATTTAGAATTTGAgattagaaaattaaaatgaggtTCTAATGTAGACAGCATTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008045 True 3282 mRNA 0.46 15 40608612 40624271

Neighbor

gene id symbol gene type direction distance location
AMCG00008047 LOC104946955 coding upstream 30182 40569832 ~ 40578430 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding upstream 341460 40252212 ~ 40267152 (+)
AMCG00008038 LOC105906738 coding upstream 370902 40215915 ~ 40237710 (+)
AMCG00008037 nsfl1c,LOC106566439 coding upstream 394629 40208137 ~ 40213983 (+)
AMCG00008035 NA coding upstream 435776 40171697 ~ 40172836 (+)
AMCG00008048 LOC107747493 coding downstream 8373 40632644 ~ 40647166 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 24872 40649143 ~ 40661046 (+)
AMCG00008049 LOC107707748,LOC107747492 coding downstream 73753 40698024 ~ 40709849 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding downstream 100086 40724357 ~ 40745265 (+)
AMCG00008057 NA coding downstream 272345 40896616 ~ 40922814 (+)
G28032 NA non-coding upstream 330925 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 548407 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 604912 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 1003784 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1317391 39290968 ~ 39291221 (+)
G28140 NA non-coding downstream 127204 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 134427 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 136995 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 353383 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 392096 41016367 ~ 41017248 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 361374 40241312 ~ 40247238 (+)
G27974 NA other upstream 549226 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 773660 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 1016201 39510411 ~ 39592411 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 39701 40663972 ~ 40721745 (+)
G28395 NA other downstream 1368588 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1789361 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2481442 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2520534 43144805 ~ 43156072 (+)

Expression


Co-expression Network