AMCG00008047 (LOC104946955)


Basic Information

Item Value
gene id AMCG00008047
gene name LOC104946955
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40569832 ~ 40578430 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008047
AATAACTTGCAGTAAAGTTGTCCCGGCCAAAGCAGGGAGAACAGTTATATCCGAGATAATCAGCGCCAGCAACTATCTGCAGATAGGAGAGCTTGGTCACCGTTTACGAAGAAGTCCGTCCAGGTTTCCCAAATTGGACTTATTCTGCTGACTTTTCGTTCTAccttatatatatgtatatatatccattttttttaaacaagagcACCAACGAATTTAGCCGCATTCCGGGATCTGTGCGTCCATTGACGAGATTATCATTACCAGCAAAGTTGTTGATTGTGATTTAAACGGAGGGATTTCGGGGCTCGTCCGGCACCACCGAGGCGCAGACTGTCCGAAAAGTGGCGCACACACCTGCGGGGTTGGGAAGCGCTCCGTCTGAACGGGAACCGACGTGGATCCGGCTCGACAACCGACAAACCCGCACTAATAACCCACACAACAAGTAAGGGGAGCTCGCAGCACCATCTCTACAATGTACCAGAGCCTGGCTTTAGCTCCCAACCAGTCTCCTTACGCGCACGACACGGGGAACTACATCCACTCCTCGGCGGGCTCACCTGTGTACGTGCCCACGACCCGGGTGCCATCCATGCTGCCCACCCTGCCCTACCTCCAGCCTTGCGACTCGGCGCACCAGTCGCACACCTTGGGCAGCCACCACGGCTGGCCGCAGGCGGGCACGGACACGTCGGCGTTTAACCCCAGCAGCCCCCATCCACCGCCCGGATTCTCCTACTCCCACAGCCCCCCAGTaagcagcagcactgggaggGAAGGGCCTTATCAGACTCCGCTGGTCATCAGCAACGGCGCCCGGGCGGAGCAGTATGGCAGCGCCCTGGTGCGCTCGGTCGGTGGATCTTACTCCAGCCCCTATGCCACCTACATGGGCCCGGACATGGCATCGTCCTGGACACCTGGGCACTTCGAAAGCAGCATGATGCTCCAGGGCAGACAAGCGGGGCTGTCCGGACGGAGGTCCAGTCTAGAGCTGTTGGAGGAGTACCCGGGCGAGGGCCGCGAGTGTGTGAATTGCGGGTCAATATCCACGCCGCTGTGGAGGAGGGATGGCACCGGCCACTATCTGTGTAACGCCTGCGGGCTCTATCACAAAATGAACGGCATCAACAGACCTCTCATTAAACCACAGAAACGACTGGTGAAGTGGAGAGTAAAGGTCCCGAGACCTTTGGCTATGAAGAAAGAGAGCATACAAACCCGGAAAAGAAAACCGAAGAATGTTAACAAATCGAAAACATCATcggGTTCCTCGGCTTCTGGTACGAACTCCCCTTCTTCAGTCTCTCTGTCTGAAAATGCCTCGACTATAAAGAGCGAGCCGAGCATGGCTCCGTCTCCCTTCGCAGGTCAAACTGTGGTGTCTGTGTCTCAGGCTTCATCCCAGTTAGACAATCTAAACTCCGGACATCCGGAAATTAAATACGAGGATTACCACTTCACTCCAGCTTCCATAGCTCAACAGAACGGACTTTCTGTACGGCAGGACTCATGGTGCGCTTTGACACTGGCGTAAAGTCTGGACTTCCTCTTCAGTTTTCAGGCTGTGTTCTGGAGAAAGTCACACAAATACTACCTATGGACTTTTGCGAGCGACGGGGGAGAATTGTTGATACATGTAACTAAGAACACATTTGTATGGGTTATTGATGCAATTCTTTTATGACCTCTGCATGGTACATGGTTTCTGTAGAAATCAACCACTCAACAGGCTGTTGTCGGGAATATTTATAACTGtaccaaaaatatgttttacctCTTGTGACCCGATTCGATCATATTCCAAAAGCTACAGATTGAGACAAGAATATACAAAGTGCGTAAAAATCAGTGCCTTATATTCACTAATATATTGTATCATGAGTCATAGAGGtgtaaaagaaaagacaggagtgacagaccaaaaaaaaagatgaatggcttccaggtgattttttttttttttttttttttacagtatatcTGTATGACAATCTAAGTGCAATGATTCACTTTTCACAAATAGATGAAAAGGGGACACTATTaataattttgaattttgtttgaaTATGTATACCTaaatttatttgttgtattgtaaGATGTTATTCCTGTGAGggaatttaaatgttattttattgcttttgagaggaaaaaaaaaaaaagttaagttcCAGAATCAAGAATTATTTTGGGGCGGCTGTCTTTGTTTCTACCGAAGCTCTTCGAATTCTAAATCATGGAGAGTATTTAGAGCATAAGAAACTAAATCATCACTTTCTTTCCATGATAAAGGTTGTTGAAAAATAAGGAACCacccttaataaaaaaaaaatagaaggaaaaaaactacattttgcggtaatttgttttgttgatatAGTGTTTGTTTTACCGGTAgagatttttagttttgttgtttgctaTCGATTGCTTTTCCCACTGCATTTCACAACCCC

Function

NR:

description
PREDICTED: GATA-binding factor 5-A-like, partial

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0001706 endoderm formation biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0060972 left/right pattern formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17896 GATA5; GATA-binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008047 True 2462 mRNA 0.47 7 40569832 40578430

Neighbor

gene id symbol gene type direction distance location
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding upstream 302680 40252212 ~ 40267152 (+)
AMCG00008038 LOC105906738 coding upstream 332122 40215915 ~ 40237710 (+)
AMCG00008037 nsfl1c,LOC106566439 coding upstream 355849 40208137 ~ 40213983 (+)
AMCG00008035 NA coding upstream 396996 40171697 ~ 40172836 (+)
AMCG00008031 NA coding upstream 455492 40101186 ~ 40114340 (+)
AMCG00008045 NA coding downstream 30182 40608612 ~ 40624271 (+)
AMCG00008048 LOC107747493 coding downstream 54214 40632644 ~ 40647166 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 70713 40649143 ~ 40661046 (+)
AMCG00008049 LOC107707748,LOC107747492 coding downstream 119594 40698024 ~ 40709849 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding downstream 145927 40724357 ~ 40745265 (+)
G28032 NA non-coding upstream 292145 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 509627 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 566132 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 965004 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1278611 39290968 ~ 39291221 (+)
G28140 NA non-coding downstream 173045 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 180268 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 182836 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 399224 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 437937 41016367 ~ 41017248 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 322594 40241312 ~ 40247238 (+)
G27974 NA other upstream 510446 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 734880 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 977421 39510411 ~ 39592411 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 85542 40663972 ~ 40721745 (+)
G28395 NA other downstream 1414429 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1835202 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2527283 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2566375 43144805 ~ 43156072 (+)

Expression


Co-expression Network